miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25753 5' -55.8 NC_005337.1 + 21935 0.66 0.901811
Target:  5'- -gCGCUCCgCCGAGcucGCGgagUCAUCGGCg -3'
miRNA:   3'- agGUGAGG-GGCUCua-CGC---AGUGGUUG- -5'
25753 5' -55.8 NC_005337.1 + 36533 0.66 0.901811
Target:  5'- gCCGCgggcgUCCCCGGcGGcuggGCGgCGCCGGCg -3'
miRNA:   3'- aGGUG-----AGGGGCU-CUa---CGCaGUGGUUG- -5'
25753 5' -55.8 NC_005337.1 + 60346 0.66 0.895291
Target:  5'- aCCACggcguUCCCCacGAUGCGcC-CCAGCg -3'
miRNA:   3'- aGGUG-----AGGGGcuCUACGCaGuGGUUG- -5'
25753 5' -55.8 NC_005337.1 + 17968 0.66 0.895291
Target:  5'- aCCGCUCCaUgGAGggGCGggaGCCGAg -3'
miRNA:   3'- aGGUGAGG-GgCUCuaCGCag-UGGUUg -5'
25753 5' -55.8 NC_005337.1 + 82627 0.66 0.895291
Target:  5'- cUCgACUCCuCCGuGA-GCuuguUCACCAGCa -3'
miRNA:   3'- -AGgUGAGG-GGCuCUaCGc---AGUGGUUG- -5'
25753 5' -55.8 NC_005337.1 + 68049 0.66 0.88155
Target:  5'- -aCGCUCCCCG-GAgGCGUagaaCAGCa -3'
miRNA:   3'- agGUGAGGGGCuCUaCGCAgug-GUUG- -5'
25753 5' -55.8 NC_005337.1 + 103292 0.66 0.88155
Target:  5'- gUCCGCgaCCgcaugaaCGAGGUGCG-CAUCAACu -3'
miRNA:   3'- -AGGUGa-GGg------GCUCUACGCaGUGGUUG- -5'
25753 5' -55.8 NC_005337.1 + 45818 0.66 0.88155
Target:  5'- uUCUGCUCCUCGAcGgcGUGUUccgcgACCGGCg -3'
miRNA:   3'- -AGGUGAGGGGCU-CuaCGCAG-----UGGUUG- -5'
25753 5' -55.8 NC_005337.1 + 130049 0.66 0.87941
Target:  5'- -aCACUCaCCCGgcgacguccguuguGGccGCGUCGCUGACg -3'
miRNA:   3'- agGUGAG-GGGC--------------UCuaCGCAGUGGUUG- -5'
25753 5' -55.8 NC_005337.1 + 112885 0.66 0.874339
Target:  5'- gCCGCggCCgCCGAGAUcGCGUCuUgGGCg -3'
miRNA:   3'- aGGUGa-GG-GGCUCUA-CGCAGuGgUUG- -5'
25753 5' -55.8 NC_005337.1 + 39523 0.66 0.874339
Target:  5'- gUCCACgCCCUaccugGAGuccaGCGUCACCGu- -3'
miRNA:   3'- -AGGUGaGGGG-----CUCua--CGCAGUGGUug -5'
25753 5' -55.8 NC_005337.1 + 65785 0.66 0.874339
Target:  5'- gUCCGCgCCCCc-GGUGCG-CACCGu- -3'
miRNA:   3'- -AGGUGaGGGGcuCUACGCaGUGGUug -5'
25753 5' -55.8 NC_005337.1 + 75881 0.66 0.874339
Target:  5'- gCgGC-CUCCGAGAacgUGCGccCGCCGACg -3'
miRNA:   3'- aGgUGaGGGGCUCU---ACGCa-GUGGUUG- -5'
25753 5' -55.8 NC_005337.1 + 98750 0.66 0.874339
Target:  5'- gCgACUCCCUGcaccuCGUCACCGGCa -3'
miRNA:   3'- aGgUGAGGGGCucuacGCAGUGGUUG- -5'
25753 5' -55.8 NC_005337.1 + 8144 0.67 0.869906
Target:  5'- cCCACaUCCaCCGAucccaugccuuuggcGAUaGCGUCaACCGACu -3'
miRNA:   3'- aGGUG-AGG-GGCU---------------CUA-CGCAG-UGGUUG- -5'
25753 5' -55.8 NC_005337.1 + 118997 0.67 0.859259
Target:  5'- aCCagauGCUCgCgGAGgcGCGUCGCCAcaACg -3'
miRNA:   3'- aGG----UGAGgGgCUCuaCGCAGUGGU--UG- -5'
25753 5' -55.8 NC_005337.1 + 50209 0.67 0.859259
Target:  5'- cUCCGCcgcccugcgccUCCCCGAGG-GCGUCgugcgcgccuccGCCggUg -3'
miRNA:   3'- -AGGUG-----------AGGGGCUCUaCGCAG------------UGGuuG- -5'
25753 5' -55.8 NC_005337.1 + 133169 0.67 0.859259
Target:  5'- gCUGCUCCCgGcGGcgGCGcugCGCCGGCu -3'
miRNA:   3'- aGGUGAGGGgC-UCuaCGCa--GUGGUUG- -5'
25753 5' -55.8 NC_005337.1 + 133169 0.67 0.859259
Target:  5'- gCUGCUCCCgGcGGcgGCGcugCGCCGGCu -3'
miRNA:   3'- aGGUGAGGGgC-UCuaCGCa--GUGGUUG- -5'
25753 5' -55.8 NC_005337.1 + 16708 0.67 0.851402
Target:  5'- cUCCGCUgCCgGGuGAcGCGUCAgUAGCa -3'
miRNA:   3'- -AGGUGAgGGgCU-CUaCGCAGUgGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.