miRNA display CGI


Results 21 - 40 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25753 5' -55.8 NC_005337.1 + 68441 0.67 0.843342
Target:  5'- gUCCGCUCUCgGAGccGCGcUCAaggaCGGCa -3'
miRNA:   3'- -AGGUGAGGGgCUCuaCGC-AGUg---GUUG- -5'
25753 5' -55.8 NC_005337.1 + 40790 0.67 0.843342
Target:  5'- gUCCGCgUCUCCGAG--GCG-CACCAccACg -3'
miRNA:   3'- -AGGUG-AGGGGCUCuaCGCaGUGGU--UG- -5'
25753 5' -55.8 NC_005337.1 + 5787 0.67 0.840886
Target:  5'- aCCACUCgCCGAccgcccgcagggacGAUGCaGUCGCaAGCg -3'
miRNA:   3'- aGGUGAGgGGCU--------------CUACG-CAGUGgUUG- -5'
25753 5' -55.8 NC_005337.1 + 92431 0.67 0.840886
Target:  5'- cCCGCUCCCgcccgaCGAGGaggagccggacaccUGCGUCGCgAAg -3'
miRNA:   3'- aGGUGAGGG------GCUCU--------------ACGCAGUGgUUg -5'
25753 5' -55.8 NC_005337.1 + 128483 0.67 0.835087
Target:  5'- aCCGCgugCUCgCGGGcGUGCGUCGCguACg -3'
miRNA:   3'- aGGUGa--GGG-GCUC-UACGCAGUGguUG- -5'
25753 5' -55.8 NC_005337.1 + 52205 0.67 0.835087
Target:  5'- gUCCGCUacaucacgCCCCGGGAcGUGgccgCGCuCGACg -3'
miRNA:   3'- -AGGUGA--------GGGGCUCUaCGCa---GUG-GUUG- -5'
25753 5' -55.8 NC_005337.1 + 25421 0.67 0.826643
Target:  5'- uUCCGCUCgCaCGAcGgcGUGUCGCCcGCg -3'
miRNA:   3'- -AGGUGAGgG-GCU-CuaCGCAGUGGuUG- -5'
25753 5' -55.8 NC_005337.1 + 131372 0.67 0.826643
Target:  5'- gCCGCUCCUgGAcGUG-GUCugCAGCc -3'
miRNA:   3'- aGGUGAGGGgCUcUACgCAGugGUUG- -5'
25753 5' -55.8 NC_005337.1 + 123884 0.67 0.826643
Target:  5'- cUCCACagCCCGAGcaccagcUGCGUgGCCGc- -3'
miRNA:   3'- -AGGUGagGGGCUCu------ACGCAgUGGUug -5'
25753 5' -55.8 NC_005337.1 + 91892 0.68 0.815398
Target:  5'- gCCGCggcgCCuCCGGGucgccggucacgacGUGCGUCGCCGc- -3'
miRNA:   3'- aGGUGa---GG-GGCUC--------------UACGCAGUGGUug -5'
25753 5' -55.8 NC_005337.1 + 85998 0.68 0.809223
Target:  5'- aCCGCgggUCCagCCGcAGGUGCGUCacGCCGAUg -3'
miRNA:   3'- aGGUG---AGG--GGC-UCUACGCAG--UGGUUG- -5'
25753 5' -55.8 NC_005337.1 + 37160 0.68 0.809223
Target:  5'- cUCCGCcaCCgCCGAGcgccacUGCGgCACCAGCa -3'
miRNA:   3'- -AGGUGa-GG-GGCUCu-----ACGCaGUGGUUG- -5'
25753 5' -55.8 NC_005337.1 + 40140 0.68 0.809223
Target:  5'- -gCGCcgCCCCGGGAaauacgUGCucaugGUCACCGACc -3'
miRNA:   3'- agGUGa-GGGGCUCU------ACG-----CAGUGGUUG- -5'
25753 5' -55.8 NC_005337.1 + 68082 0.68 0.808335
Target:  5'- cUCCgGCUCCgucuugauggcgcUCGAGAUGUGcucCACCAGCu -3'
miRNA:   3'- -AGG-UGAGG-------------GGCUCUACGCa--GUGGUUG- -5'
25753 5' -55.8 NC_005337.1 + 57621 0.68 0.800263
Target:  5'- -gCAC-CUCCGGGAcGUGuUCACCAACu -3'
miRNA:   3'- agGUGaGGGGCUCUaCGC-AGUGGUUG- -5'
25753 5' -55.8 NC_005337.1 + 96175 0.68 0.800263
Target:  5'- -gCAaaaUCCCgGAGAUGgGauUCACCAACc -3'
miRNA:   3'- agGUg--AGGGgCUCUACgC--AGUGGUUG- -5'
25753 5' -55.8 NC_005337.1 + 93775 0.68 0.799359
Target:  5'- aCCACgcaCCacgugaucgcuguUGAGGUGCGUCAgCAGCu -3'
miRNA:   3'- aGGUGag-GG-------------GCUCUACGCAGUgGUUG- -5'
25753 5' -55.8 NC_005337.1 + 77706 0.68 0.791148
Target:  5'- cUCCACggggUCCCGgaGGAUGCGgaagggCACCGc- -3'
miRNA:   3'- -AGGUGa---GGGGC--UCUACGCa-----GUGGUug -5'
25753 5' -55.8 NC_005337.1 + 87089 0.68 0.791148
Target:  5'- gUCCAcCUUCCCGGGcGUGUGcagCACCAu- -3'
miRNA:   3'- -AGGU-GAGGGGCUC-UACGCa--GUGGUug -5'
25753 5' -55.8 NC_005337.1 + 86089 0.68 0.790229
Target:  5'- gUCCACgUCCCCgGAGAcGCacuccggGUC-CCAGCa -3'
miRNA:   3'- -AGGUG-AGGGG-CUCUaCG-------CAGuGGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.