miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25754 3' -56.7 NC_005337.1 + 91346 0.67 0.778673
Target:  5'- --cGCAGGUucuGGCCguugaaggugAGCUGCcgCAGCGa -3'
miRNA:   3'- gaaCGUCCA---CCGG----------UCGGUGuaGUCGU- -5'
25754 3' -56.7 NC_005337.1 + 104705 0.68 0.68874
Target:  5'- --gGCAGGccaacgagGGCC-GCCGCcgCGGCGg -3'
miRNA:   3'- gaaCGUCCa-------CCGGuCGGUGuaGUCGU- -5'
25754 3' -56.7 NC_005337.1 + 6035 0.68 0.69906
Target:  5'- --aGCAGGgccGuGCgCAGCCcCAUCAGCu -3'
miRNA:   3'- gaaCGUCCa--C-CG-GUCGGuGUAGUCGu -5'
25754 3' -56.7 NC_005337.1 + 2881 0.68 0.729627
Target:  5'- ---cCAGcGUGGCCGGCgGCGUcCGGCu -3'
miRNA:   3'- gaacGUC-CACCGGUCGgUGUA-GUCGu -5'
25754 3' -56.7 NC_005337.1 + 2055 0.68 0.729627
Target:  5'- gUUG-AGGUcGGCCccguGCCGCAgCAGCAg -3'
miRNA:   3'- gAACgUCCA-CCGGu---CGGUGUaGUCGU- -5'
25754 3' -56.7 NC_005337.1 + 96830 0.67 0.739653
Target:  5'- -cUGCGGGU-GCgCAGCCGCGgcgUGGCGu -3'
miRNA:   3'- gaACGUCCAcCG-GUCGGUGUa--GUCGU- -5'
25754 3' -56.7 NC_005337.1 + 52109 0.67 0.759399
Target:  5'- -gUGCAGGUgcgcgacgGGCCGGCCAU---GGCc -3'
miRNA:   3'- gaACGUCCA--------CCGGUCGGUGuagUCGu -5'
25754 3' -56.7 NC_005337.1 + 100629 0.67 0.7691
Target:  5'- --aGguGGUGuaCuGCgACAUCAGCAc -3'
miRNA:   3'- gaaCguCCACcgGuCGgUGUAGUCGU- -5'
25754 3' -56.7 NC_005337.1 + 21921 0.67 0.778673
Target:  5'- -aUGgAGGUGGCCGcgcgcuccGCCGagcucgcggaguCAUCGGCGu -3'
miRNA:   3'- gaACgUCCACCGGU--------CGGU------------GUAGUCGU- -5'
25754 3' -56.7 NC_005337.1 + 56701 0.68 0.68874
Target:  5'- --gGCAGGUGGUCAGCgGC-UCcguGCu -3'
miRNA:   3'- gaaCGUCCACCGGUCGgUGuAGu--CGu -5'
25754 3' -56.7 NC_005337.1 + 3265 0.69 0.647062
Target:  5'- gUUGC-GGUGcGCggCGGCCACGUgCAGCGg -3'
miRNA:   3'- gAACGuCCAC-CG--GUCGGUGUA-GUCGU- -5'
25754 3' -56.7 NC_005337.1 + 49856 0.7 0.605183
Target:  5'- ---cCGGGacGCCGGCgGCAUCAGCAg -3'
miRNA:   3'- gaacGUCCacCGGUCGgUGUAGUCGU- -5'
25754 3' -56.7 NC_005337.1 + 122669 0.75 0.31912
Target:  5'- --aGCAGGUGGCCcGCCGgGUguGCc -3'
miRNA:   3'- gaaCGUCCACCGGuCGGUgUAguCGu -5'
25754 3' -56.7 NC_005337.1 + 2338 0.75 0.326638
Target:  5'- --aGCAGGUacagcuccggGGCCAGCgCGCcgCAGCAc -3'
miRNA:   3'- gaaCGUCCA----------CCGGUCG-GUGuaGUCGU- -5'
25754 3' -56.7 NC_005337.1 + 68890 0.74 0.382898
Target:  5'- --cGCAGcUGGCCaAGCCGC-UCAGCGa -3'
miRNA:   3'- gaaCGUCcACCGG-UCGGUGuAGUCGU- -5'
25754 3' -56.7 NC_005337.1 + 91008 0.73 0.417814
Target:  5'- --aGCAGGUGGCgcugaggaaCAG-CGCGUCAGCGg -3'
miRNA:   3'- gaaCGUCCACCG---------GUCgGUGUAGUCGU- -5'
25754 3' -56.7 NC_005337.1 + 87982 0.72 0.492092
Target:  5'- --aGCAGGUGGCCcagguaccccuugAGCUGCugcacgcgcaugGUCAGCAg -3'
miRNA:   3'- gaaCGUCCACCGG-------------UCGGUG------------UAGUCGU- -5'
25754 3' -56.7 NC_005337.1 + 36668 0.71 0.53297
Target:  5'- -gUGCcGGcgaUGGCCAGCgACuUCAGCAc -3'
miRNA:   3'- gaACGuCC---ACCGGUCGgUGuAGUCGU- -5'
25754 3' -56.7 NC_005337.1 + 46372 0.7 0.584336
Target:  5'- --cGCAGGcGcGCCAG-CGCGUCAGCc -3'
miRNA:   3'- gaaCGUCCaC-CGGUCgGUGUAGUCGu -5'
25754 3' -56.7 NC_005337.1 + 34814 0.7 0.598917
Target:  5'- --cGCGGGUGGCCAGCgccucuaucuccCGCAUgauggggcauauaugCGGCGg -3'
miRNA:   3'- gaaCGUCCACCGGUCG------------GUGUA---------------GUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.