miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25754 5' -62.8 NC_005337.1 + 88559 0.66 0.593474
Target:  5'- cAUCGCCAcgCUGGCGGgccGGGGGUUcCGg -3'
miRNA:   3'- -UGGUGGUagGACCGCC---UCCCCGGaGC- -5'
25754 5' -62.8 NC_005337.1 + 40005 0.66 0.583662
Target:  5'- gGCCacggagGCCAUCCgcgcGGUGGAGaugcuagcGGGCgUCGu -3'
miRNA:   3'- -UGG------UGGUAGGa---CCGCCUC--------CCCGgAGC- -5'
25754 5' -62.8 NC_005337.1 + 42990 0.66 0.573882
Target:  5'- gGCCAgaCGUugaaCUUGGCGGAGaggauGGCCUCGc -3'
miRNA:   3'- -UGGUg-GUA----GGACCGCCUCc----CCGGAGC- -5'
25754 5' -62.8 NC_005337.1 + 96475 0.66 0.573882
Target:  5'- cGCCACguUUCcGGCGGGGccuGGCCUgGg -3'
miRNA:   3'- -UGGUGguAGGaCCGCCUCc--CCGGAgC- -5'
25754 5' -62.8 NC_005337.1 + 100576 0.66 0.56414
Target:  5'- cGCCACCA-CCUucgaGGAGGuggcgcccgccGGCCUCGg -3'
miRNA:   3'- -UGGUGGUaGGAccg-CCUCC-----------CCGGAGC- -5'
25754 5' -62.8 NC_005337.1 + 74163 0.66 0.56414
Target:  5'- cACCGCCGUgCUGcG-GGAGGcGCgCUCGg -3'
miRNA:   3'- -UGGUGGUAgGAC-CgCCUCCcCG-GAGC- -5'
25754 5' -62.8 NC_005337.1 + 50354 0.66 0.56414
Target:  5'- aACC-CCAcgCC-GGCGGAGacGGGCC-CGg -3'
miRNA:   3'- -UGGuGGUa-GGaCCGCCUC--CCCGGaGC- -5'
25754 5' -62.8 NC_005337.1 + 2995 0.66 0.554443
Target:  5'- cGCCugCga-CUGGCGGAcGGGCUcCGg -3'
miRNA:   3'- -UGGugGuagGACCGCCUcCCCGGaGC- -5'
25754 5' -62.8 NC_005337.1 + 82364 0.66 0.554443
Target:  5'- gGCCGCCGaCUgcacGGCGccGaGGGCCUCGu -3'
miRNA:   3'- -UGGUGGUaGGa---CCGCcuC-CCCGGAGC- -5'
25754 5' -62.8 NC_005337.1 + 19596 0.66 0.544795
Target:  5'- uCCACUgcGUCCa-GCGGAgaGGcGGCCUCGa -3'
miRNA:   3'- uGGUGG--UAGGacCGCCU--CC-CCGGAGC- -5'
25754 5' -62.8 NC_005337.1 + 91601 0.66 0.544795
Target:  5'- uCCACCAUCCgGGCGcGgaagccgaucucGGGcGGCC-CGa -3'
miRNA:   3'- uGGUGGUAGGaCCGC-C------------UCC-CCGGaGC- -5'
25754 5' -62.8 NC_005337.1 + 59225 0.67 0.506804
Target:  5'- gACgACgGgaacuUCCUGGCGGAgaucGGGGCCa-- -3'
miRNA:   3'- -UGgUGgU-----AGGACCGCCU----CCCCGGagc -5'
25754 5' -62.8 NC_005337.1 + 92461 0.67 0.506804
Target:  5'- cACCGCCGguUCCUGGCGaac--GCCUCGa -3'
miRNA:   3'- -UGGUGGU--AGGACCGCcucccCGGAGC- -5'
25754 5' -62.8 NC_005337.1 + 47523 0.68 0.460996
Target:  5'- gAUgGCCAUCgUGcCGGAGcGGGaCCUCGu -3'
miRNA:   3'- -UGgUGGUAGgACcGCCUC-CCC-GGAGC- -5'
25754 5' -62.8 NC_005337.1 + 10200 0.68 0.443291
Target:  5'- uCCA-CAUCCUGGuCGGcAGGGGCaUUGg -3'
miRNA:   3'- uGGUgGUAGGACC-GCC-UCCCCGgAGC- -5'
25754 5' -62.8 NC_005337.1 + 127462 0.68 0.443291
Target:  5'- uCCGCCG-CCUGcuCGGGgccGGGGCCUCc -3'
miRNA:   3'- uGGUGGUaGGACc-GCCU---CCCCGGAGc -5'
25754 5' -62.8 NC_005337.1 + 18658 0.69 0.376544
Target:  5'- cGCCGCCG-CCggcgGGCGGAuccGaGGGCCggUCGg -3'
miRNA:   3'- -UGGUGGUaGGa---CCGCCU---C-CCCGG--AGC- -5'
25754 5' -62.8 NC_005337.1 + 52185 0.7 0.371817
Target:  5'- gAUCACCAacgggcucgugguguUCCUGGUGGAGcGGCgCUCc -3'
miRNA:   3'- -UGGUGGU---------------AGGACCGCCUCcCCG-GAGc -5'
25754 5' -62.8 NC_005337.1 + 73234 0.72 0.262259
Target:  5'- gACCACCAggagccgcaacuaCCUGGUGGAGGcGuaCUCGg -3'
miRNA:   3'- -UGGUGGUa------------GGACCGCCUCC-CcgGAGC- -5'
25754 5' -62.8 NC_005337.1 + 98214 0.73 0.241288
Target:  5'- cACCGCCAguuccCCUcGGCcccGGGGGCCUCGc -3'
miRNA:   3'- -UGGUGGUa----GGA-CCGcc-UCCCCGGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.