miRNA display CGI


Results 1 - 20 of 315 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25755 3' -60.7 NC_005337.1 + 24869 0.66 0.706116
Target:  5'- uCGCGCACGCcGUGucuGUgGAcGGCaCGCc -3'
miRNA:   3'- uGCGCGUGCGaCGC---CAgCUaCCG-GCG- -5'
25755 3' -60.7 NC_005337.1 + 117261 0.66 0.706116
Target:  5'- -aGUGCGCGCUGgacGUCGA-GGCCccGCc -3'
miRNA:   3'- ugCGCGUGCGACgc-CAGCUaCCGG--CG- -5'
25755 3' -60.7 NC_005337.1 + 23735 0.66 0.706116
Target:  5'- cCGC-CGCGgaGCGGcagcaGAaGGCCGCc -3'
miRNA:   3'- uGCGcGUGCgaCGCCag---CUaCCGGCG- -5'
25755 3' -60.7 NC_005337.1 + 81772 0.66 0.706116
Target:  5'- cGCGUGCAgGUUGCGc---AUGGCgCGCa -3'
miRNA:   3'- -UGCGCGUgCGACGCcagcUACCG-GCG- -5'
25755 3' -60.7 NC_005337.1 + 124433 0.66 0.706116
Target:  5'- aACGC-CGCGC-GCGGgugCGG-GGCCuGCc -3'
miRNA:   3'- -UGCGcGUGCGaCGCCa--GCUaCCGG-CG- -5'
25755 3' -60.7 NC_005337.1 + 109381 0.66 0.706116
Target:  5'- gGCGgGCACGC-GCGGgucUGgcGuGCCGUc -3'
miRNA:   3'- -UGCgCGUGCGaCGCCa--GCuaC-CGGCG- -5'
25755 3' -60.7 NC_005337.1 + 23059 0.66 0.706116
Target:  5'- cACGcCGCGCGC--CGGaacgCGgcGGCCGUg -3'
miRNA:   3'- -UGC-GCGUGCGacGCCa---GCuaCCGGCG- -5'
25755 3' -60.7 NC_005337.1 + 11510 0.66 0.706116
Target:  5'- gACGCGUcguGCGCcgggcaGCGcagGGUGGCCGCc -3'
miRNA:   3'- -UGCGCG---UGCGa-----CGCcagCUACCGGCG- -5'
25755 3' -60.7 NC_005337.1 + 80270 0.66 0.70514
Target:  5'- uGCGCGUGCGCgacGCGGU-GAUccGGCucacaaaCGCg -3'
miRNA:   3'- -UGCGCGUGCGa--CGCCAgCUA--CCG-------GCG- -5'
25755 3' -60.7 NC_005337.1 + 131365 0.66 0.70514
Target:  5'- cACGagaaGCGCGC-GCGGuacgucuUCGAccgcggGGCCGUg -3'
miRNA:   3'- -UGCg---CGUGCGaCGCC-------AGCUa-----CCGGCG- -5'
25755 3' -60.7 NC_005337.1 + 117844 0.66 0.702209
Target:  5'- gUGCGCACGCagGCGGUgGGggacaaggggacgGGgCGUc -3'
miRNA:   3'- uGCGCGUGCGa-CGCCAgCUa------------CCgGCG- -5'
25755 3' -60.7 NC_005337.1 + 75638 0.66 0.700252
Target:  5'- cCGCGUGCGCgaggagaacuccacgUGCGaGauccCGAaGGCCGCg -3'
miRNA:   3'- uGCGCGUGCG---------------ACGC-Ca---GCUaCCGGCG- -5'
25755 3' -60.7 NC_005337.1 + 2084 0.66 0.696331
Target:  5'- -gGCGCACGgUGuCGG-CGcgcGCCGCg -3'
miRNA:   3'- ugCGCGUGCgAC-GCCaGCuacCGGCG- -5'
25755 3' -60.7 NC_005337.1 + 41670 0.66 0.696331
Target:  5'- gACGCGCGCGaacGCGGUCugcacgGGCUc- -3'
miRNA:   3'- -UGCGCGUGCga-CGCCAGcua---CCGGcg -5'
25755 3' -60.7 NC_005337.1 + 62635 0.66 0.696331
Target:  5'- uGCGCgGCcagGCGCUGCuGGaaGAcguUGGCCGg -3'
miRNA:   3'- -UGCG-CG---UGCGACG-CCagCU---ACCGGCg -5'
25755 3' -60.7 NC_005337.1 + 116681 0.66 0.696331
Target:  5'- cUGCaGC-CGCccGCGGgCGAgccGGCCGCa -3'
miRNA:   3'- uGCG-CGuGCGa-CGCCaGCUa--CCGGCG- -5'
25755 3' -60.7 NC_005337.1 + 19553 0.66 0.696331
Target:  5'- cACGCGCcggACGUcguaaaCGG-CGGUGaGCCGCg -3'
miRNA:   3'- -UGCGCG---UGCGac----GCCaGCUAC-CGGCG- -5'
25755 3' -60.7 NC_005337.1 + 61406 0.66 0.696331
Target:  5'- gGCGUGCACGUccaGCaGGuUCGcgGacaGCCGCa -3'
miRNA:   3'- -UGCGCGUGCGa--CG-CC-AGCuaC---CGGCG- -5'
25755 3' -60.7 NC_005337.1 + 91884 0.66 0.696331
Target:  5'- gGC-CGCGCGCcGCGG-CGccuccgGGUCGCc -3'
miRNA:   3'- -UGcGCGUGCGaCGCCaGCua----CCGGCG- -5'
25755 3' -60.7 NC_005337.1 + 102977 0.66 0.696331
Target:  5'- gAUGCGCuucgaGCaGCGGaaGAUGGCCu- -3'
miRNA:   3'- -UGCGCGug---CGaCGCCagCUACCGGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.