miRNA display CGI


Results 1 - 20 of 315 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25755 3' -60.7 NC_005337.1 + 11465 1.11 0.000689
Target:  5'- gACGCGCACGCUGCGGUCGAUGGCCGCg -3'
miRNA:   3'- -UGCGCGUGCGACGCCAGCUACCGGCG- -5'
25755 3' -60.7 NC_005337.1 + 131899 0.81 0.091308
Target:  5'- gGCGCGCACGUggacGCGGUCGAccgGuGCUGCg -3'
miRNA:   3'- -UGCGCGUGCGa---CGCCAGCUa--C-CGGCG- -5'
25755 3' -60.7 NC_005337.1 + 112670 0.79 0.118005
Target:  5'- cGCGCGCAUgaaguccagGUUGCGGUCGAUGG-CGUg -3'
miRNA:   3'- -UGCGCGUG---------CGACGCCAGCUACCgGCG- -5'
25755 3' -60.7 NC_005337.1 + 133067 0.79 0.124155
Target:  5'- cCGCGUACGCgGCGc-CGGUGGCCGCc -3'
miRNA:   3'- uGCGCGUGCGaCGCcaGCUACCGGCG- -5'
25755 3' -60.7 NC_005337.1 + 1642 0.79 0.12734
Target:  5'- gAUGCGCGCGCccGCGG-CGAcgagcuUGGCCGCc -3'
miRNA:   3'- -UGCGCGUGCGa-CGCCaGCU------ACCGGCG- -5'
25755 3' -60.7 NC_005337.1 + 82200 0.78 0.151832
Target:  5'- gGCGCGCACgGCcgGCGGUCGAaGaGCCGa -3'
miRNA:   3'- -UGCGCGUG-CGa-CGCCAGCUaC-CGGCg -5'
25755 3' -60.7 NC_005337.1 + 97771 0.78 0.155662
Target:  5'- cACGCGCGCGCUGCGcgaGAaGGaCCGCu -3'
miRNA:   3'- -UGCGCGUGCGACGCcagCUaCC-GGCG- -5'
25755 3' -60.7 NC_005337.1 + 132058 0.78 0.155662
Target:  5'- cUGCGCGCGCUcGCGGcCcg-GGCCGCg -3'
miRNA:   3'- uGCGCGUGCGA-CGCCaGcuaCCGGCG- -5'
25755 3' -60.7 NC_005337.1 + 90011 0.77 0.15958
Target:  5'- cCGCGCGCGUaGCGGUCGAUGaacgaaaucauGuCCGCg -3'
miRNA:   3'- uGCGCGUGCGaCGCCAGCUAC-----------C-GGCG- -5'
25755 3' -60.7 NC_005337.1 + 1829 0.77 0.165213
Target:  5'- aGCGCGCucgcgacuuuggcgaGCGC-GCaGUUGGUGGCCGCg -3'
miRNA:   3'- -UGCGCG---------------UGCGaCGcCAGCUACCGGCG- -5'
25755 3' -60.7 NC_005337.1 + 34057 0.77 0.17187
Target:  5'- cACGCGCACGCgGCGccggccGUCGuagagcaGGCCGCg -3'
miRNA:   3'- -UGCGCGUGCGaCGC------CAGCua-----CCGGCG- -5'
25755 3' -60.7 NC_005337.1 + 16016 0.77 0.177019
Target:  5'- uACGCGCggccggcagguacacGCGCUGCGGcgccugccgccgCGcgGGCCGCu -3'
miRNA:   3'- -UGCGCG---------------UGCGACGCCa-----------GCuaCCGGCG- -5'
25755 3' -60.7 NC_005337.1 + 43896 0.76 0.184999
Target:  5'- gAUGUGCACGC-GCGGcCGGaagaGGCCGCg -3'
miRNA:   3'- -UGCGCGUGCGaCGCCaGCUa---CCGGCG- -5'
25755 3' -60.7 NC_005337.1 + 35403 0.76 0.189568
Target:  5'- cCGCGCGCGCggcGCGGuaguacugcUCGAUGGaCGCg -3'
miRNA:   3'- uGCGCGUGCGa--CGCC---------AGCUACCgGCG- -5'
25755 3' -60.7 NC_005337.1 + 28978 0.76 0.194236
Target:  5'- gUGCGCAgCGaCUGCGGgcagCGgcGGCCGCc -3'
miRNA:   3'- uGCGCGU-GC-GACGCCa---GCuaCCGGCG- -5'
25755 3' -60.7 NC_005337.1 + 66310 0.76 0.194236
Target:  5'- cCGCGUgaGCGCcGCGGUCGcgGGCUGg -3'
miRNA:   3'- uGCGCG--UGCGaCGCCAGCuaCCGGCg -5'
25755 3' -60.7 NC_005337.1 + 112463 0.76 0.194236
Target:  5'- cGCGCGCACgaagaGCUGCGGcgcgUCGAaGGCgGCc -3'
miRNA:   3'- -UGCGCGUG-----CGACGCC----AGCUaCCGgCG- -5'
25755 3' -60.7 NC_005337.1 + 76114 0.76 0.194236
Target:  5'- cAUGCGCACGCgcuUGCGcG-CGAaGGCCGCc -3'
miRNA:   3'- -UGCGCGUGCG---ACGC-CaGCUaCCGGCG- -5'
25755 3' -60.7 NC_005337.1 + 96098 0.76 0.194236
Target:  5'- cACGCGgGCGCgGCGGagGAcaugcGGCCGCg -3'
miRNA:   3'- -UGCGCgUGCGaCGCCagCUa----CCGGCG- -5'
25755 3' -60.7 NC_005337.1 + 39493 0.76 0.203875
Target:  5'- cGCGCGCGCGCUGCugcuGGUgaaccccacCGcgGGCCaGCu -3'
miRNA:   3'- -UGCGCGUGCGACG----CCA---------GCuaCCGG-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.