miRNA display CGI


Results 1 - 20 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25755 5' -57.2 NC_005337.1 + 28754 0.66 0.849026
Target:  5'- uCGCGUCCAUGGcggCCGCGaugaucugcGCCAcGaACu -3'
miRNA:   3'- uGCGCAGGUACUa--GGCGC---------CGGU-CaUG- -5'
25755 5' -57.2 NC_005337.1 + 40595 0.66 0.849026
Target:  5'- gGCGaagaaGUCCAggaacauguacUGGUacgCCGCGGCCGGccGCg -3'
miRNA:   3'- -UGCg----CAGGU-----------ACUA---GGCGCCGGUCa-UG- -5'
25755 5' -57.2 NC_005337.1 + 36655 0.66 0.849026
Target:  5'- gACGUcccGUCCGcGAaggCCGCGGCCAccGUGu -3'
miRNA:   3'- -UGCG---CAGGUaCUa--GGCGCCGGU--CAUg -5'
25755 5' -57.2 NC_005337.1 + 2776 0.66 0.849026
Target:  5'- -gGCuGUCCAcGAg-CGCGGaCCGGUGCc -3'
miRNA:   3'- ugCG-CAGGUaCUagGCGCC-GGUCAUG- -5'
25755 5' -57.2 NC_005337.1 + 97204 0.66 0.849026
Target:  5'- cCGCG-CCAUGGUggccaUCGUGGUCAGccgGCa -3'
miRNA:   3'- uGCGCaGGUACUA-----GGCGCCGGUCa--UG- -5'
25755 5' -57.2 NC_005337.1 + 58871 0.66 0.849026
Target:  5'- cGCGcCGUCCGcGcAUCCGCgcGGCCAagACg -3'
miRNA:   3'- -UGC-GCAGGUaC-UAGGCG--CCGGUcaUG- -5'
25755 5' -57.2 NC_005337.1 + 122741 0.66 0.849026
Target:  5'- -gGUGcCCGUGAUCCGCacGCCgaccgcguggAGUACu -3'
miRNA:   3'- ugCGCaGGUACUAGGCGc-CGG----------UCAUG- -5'
25755 5' -57.2 NC_005337.1 + 128505 0.66 0.849026
Target:  5'- uCGCGUaCGUGGUCgCGCGGCUGccgcccgccgccGUGCc -3'
miRNA:   3'- uGCGCAgGUACUAG-GCGCCGGU------------CAUG- -5'
25755 5' -57.2 NC_005337.1 + 13707 0.66 0.844213
Target:  5'- uGCGCGguggagcagaucacgUCCAggucgCCGUGGCUAGUGg -3'
miRNA:   3'- -UGCGC---------------AGGUacua-GGCGCCGGUCAUg -5'
25755 5' -57.2 NC_005337.1 + 62623 0.66 0.840965
Target:  5'- cGCGCGUUgAa-GUgCGCGGCCAG-GCg -3'
miRNA:   3'- -UGCGCAGgUacUAgGCGCCGGUCaUG- -5'
25755 5' -57.2 NC_005337.1 + 52091 0.66 0.832714
Target:  5'- uGCGCGcCCGgcggCCGCGuGCaGGUGCg -3'
miRNA:   3'- -UGCGCaGGUacuaGGCGC-CGgUCAUG- -5'
25755 5' -57.2 NC_005337.1 + 86190 0.66 0.831878
Target:  5'- gGCGCGUCCGUGAcgaCGUaccugaacagcuuGGCgaAGUGCc -3'
miRNA:   3'- -UGCGCAGGUACUag-GCG-------------CCGg-UCAUG- -5'
25755 5' -57.2 NC_005337.1 + 78343 0.66 0.831878
Target:  5'- cACGCGUCCGUccuccagGAUgCCGCGG-UAGUu- -3'
miRNA:   3'- -UGCGCAGGUA-------CUA-GGCGCCgGUCAug -5'
25755 5' -57.2 NC_005337.1 + 124967 0.66 0.824279
Target:  5'- cUGuCGUCCGUGcGUUCGCcGCCAGcUACu -3'
miRNA:   3'- uGC-GCAGGUAC-UAGGCGcCGGUC-AUG- -5'
25755 5' -57.2 NC_005337.1 + 82146 0.66 0.824279
Target:  5'- cACGCGUCCAcGAaggCCaUGGCCGGc-- -3'
miRNA:   3'- -UGCGCAGGUaCUa--GGcGCCGGUCaug -5'
25755 5' -57.2 NC_005337.1 + 29894 0.66 0.824279
Target:  5'- uUGUGUCCGUacgCCGUGGUCAGg-- -3'
miRNA:   3'- uGCGCAGGUAcuaGGCGCCGGUCaug -5'
25755 5' -57.2 NC_005337.1 + 123303 0.66 0.824279
Target:  5'- cACGCGcUgCGcgGAUCgCGcCGGCCAGUGu -3'
miRNA:   3'- -UGCGC-AgGUa-CUAG-GC-GCCGGUCAUg -5'
25755 5' -57.2 NC_005337.1 + 3248 0.66 0.824279
Target:  5'- cGCGCGcacgCCuugucguugcgGUGcgCgGCGGCCAcGUGCa -3'
miRNA:   3'- -UGCGCa---GG-----------UACuaGgCGCCGGU-CAUG- -5'
25755 5' -57.2 NC_005337.1 + 86256 0.66 0.821714
Target:  5'- cCGUGUUCGUGcUCCGCagcgcgcggauccaGGCCacgcAGUGCg -3'
miRNA:   3'- uGCGCAGGUACuAGGCG--------------CCGG----UCAUG- -5'
25755 5' -57.2 NC_005337.1 + 98856 0.66 0.821714
Target:  5'- uGCGCGUCCAUcgagcaguacuaccGcgCCGCGcGCgCGGacUGCg -3'
miRNA:   3'- -UGCGCAGGUA--------------CuaGGCGC-CG-GUC--AUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.