Results 1 - 20 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25756 | 3' | -58 | NC_005337.1 | + | 24348 | 0.66 | 0.806004 |
Target: 5'- ----cGCGGUGCAGUGCCugcuggaGGaGUUCUCc -3' miRNA: 3'- agcuaCGCCACGUCGUGG-------UC-CAGGAG- -5' |
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25756 | 3' | -58 | NC_005337.1 | + | 74951 | 0.66 | 0.797953 |
Target: 5'- -gGAUGCGGUGCuggggcuccgcGGCuacgcgauagcgGCCGGGUCg-- -3' miRNA: 3'- agCUACGCCACG-----------UCG------------UGGUCCAGgag -5' |
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25756 | 3' | -58 | NC_005337.1 | + | 110474 | 0.66 | 0.797953 |
Target: 5'- gUCGcccGUGCGGcGCAgGUACCGGG-CCa- -3' miRNA: 3'- -AGC---UACGCCaCGU-CGUGGUCCaGGag -5' |
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25756 | 3' | -58 | NC_005337.1 | + | 82516 | 0.66 | 0.797953 |
Target: 5'- aCGggGCGGccgucCAGCGCCAGGgcgggcagCCUg -3' miRNA: 3'- aGCuaCGCCac---GUCGUGGUCCa-------GGAg -5' |
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25756 | 3' | -58 | NC_005337.1 | + | 40874 | 0.66 | 0.788865 |
Target: 5'- cCGGUGCagaGG-GCGGCcguCCuGGUCCUg -3' miRNA: 3'- aGCUACG---CCaCGUCGu--GGuCCAGGAg -5' |
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25756 | 3' | -58 | NC_005337.1 | + | 13770 | 0.66 | 0.788865 |
Target: 5'- cCGAacGCGGcgaGgGGCGCCAGGUCguagCUCg -3' miRNA: 3'- aGCUa-CGCCa--CgUCGUGGUCCAG----GAG- -5' |
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25756 | 3' | -58 | NC_005337.1 | + | 58972 | 0.66 | 0.788865 |
Target: 5'- gUCGcgGCaGUucacGCAGCuguuCCGGGUgCUCa -3' miRNA: 3'- -AGCuaCGcCA----CGUCGu---GGUCCAgGAG- -5' |
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25756 | 3' | -58 | NC_005337.1 | + | 37446 | 0.66 | 0.779635 |
Target: 5'- aCGccGCGGcUGC-GCACCcgcAGGUCCg- -3' miRNA: 3'- aGCuaCGCC-ACGuCGUGG---UCCAGGag -5' |
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25756 | 3' | -58 | NC_005337.1 | + | 31519 | 0.66 | 0.779635 |
Target: 5'- -gGAUGCucacGGUGCAgGUGCCGcGGUUCUUg -3' miRNA: 3'- agCUACG----CCACGU-CGUGGU-CCAGGAG- -5' |
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25756 | 3' | -58 | NC_005337.1 | + | 111427 | 0.66 | 0.779635 |
Target: 5'- gCGccGCGGUcCAGCACgAGcgggucGUCCUCg -3' miRNA: 3'- aGCuaCGCCAcGUCGUGgUC------CAGGAG- -5' |
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25756 | 3' | -58 | NC_005337.1 | + | 128808 | 0.66 | 0.770272 |
Target: 5'- cCGA-GCGGUGCcGCACCAccguguGGUaCgUCa -3' miRNA: 3'- aGCUaCGCCACGuCGUGGU------CCA-GgAG- -5' |
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25756 | 3' | -58 | NC_005337.1 | + | 22652 | 0.66 | 0.770272 |
Target: 5'- uUCGgcGCGGacgcGCGGCugCGGGagcgCUUCg -3' miRNA: 3'- -AGCuaCGCCa---CGUCGugGUCCa---GGAG- -5' |
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25756 | 3' | -58 | NC_005337.1 | + | 89638 | 0.66 | 0.766492 |
Target: 5'- cCGcUGCGGcgcacgaucaggaGCAGCGCCuucAGGUUCUCc -3' miRNA: 3'- aGCuACGCCa------------CGUCGUGG---UCCAGGAG- -5' |
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25756 | 3' | -58 | NC_005337.1 | + | 29369 | 0.66 | 0.760786 |
Target: 5'- cUCGAcgGCGGccgucGCGGCGCUggugGGGUCCc- -3' miRNA: 3'- -AGCUa-CGCCa----CGUCGUGG----UCCAGGag -5' |
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25756 | 3' | -58 | NC_005337.1 | + | 17605 | 0.67 | 0.741477 |
Target: 5'- gCGG-GCGGcUGCAGCACCAuGUaggaCUCc -3' miRNA: 3'- aGCUaCGCC-ACGUCGUGGUcCAg---GAG- -5' |
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25756 | 3' | -58 | NC_005337.1 | + | 21282 | 0.67 | 0.741477 |
Target: 5'- cUCGAUGCcGaUGUuguGCGCCGGGucgaaguucgugUCCUCg -3' miRNA: 3'- -AGCUACGcC-ACGu--CGUGGUCC------------AGGAG- -5' |
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25756 | 3' | -58 | NC_005337.1 | + | 41617 | 0.67 | 0.741477 |
Target: 5'- gUCGAaGCaGUGCAGCACCucGUUC-Cg -3' miRNA: 3'- -AGCUaCGcCACGUCGUGGucCAGGaG- -5' |
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25756 | 3' | -58 | NC_005337.1 | + | 10605 | 0.67 | 0.741477 |
Target: 5'- cCGccGCGGgggagcgGCGGCGCCAGGacgaCCgUCg -3' miRNA: 3'- aGCuaCGCCa------CGUCGUGGUCCa---GG-AG- -5' |
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25756 | 3' | -58 | NC_005337.1 | + | 44538 | 0.67 | 0.735607 |
Target: 5'- aCGAgGUcaagaacuccauccuGGaGCGGUACCGGGUCUUCg -3' miRNA: 3'- aGCUaCG---------------CCaCGUCGUGGUCCAGGAG- -5' |
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25756 | 3' | -58 | NC_005337.1 | + | 40549 | 0.67 | 0.731675 |
Target: 5'- gCGcgGUGGUGCGGUucuCgAGGaugUCCUCc -3' miRNA: 3'- aGCuaCGCCACGUCGu--GgUCC---AGGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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