miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25756 5' -55.6 NC_005337.1 + 130579 0.66 0.899788
Target:  5'- -uGgcGCCgAGGAcaagaaGCcgCgUCGGGCGCg -3'
miRNA:   3'- auCuuCGGgUCCU------UGaaG-AGCCCGCG- -5'
25756 5' -55.6 NC_005337.1 + 44613 0.66 0.899788
Target:  5'- -cGgcGCCUGGGAGCcUCUCGaGUGUu -3'
miRNA:   3'- auCuuCGGGUCCUUGaAGAGCcCGCG- -5'
25756 5' -55.6 NC_005337.1 + 128770 0.66 0.899788
Target:  5'- aAGAGGCgCAGGcggaUUCggguccaCGGGCGUg -3'
miRNA:   3'- aUCUUCGgGUCCuug-AAGa------GCCCGCG- -5'
25756 5' -55.6 NC_005337.1 + 55815 0.66 0.893126
Target:  5'- -cGAGGUgCu-GAACcugCUCGGGCGCu -3'
miRNA:   3'- auCUUCGgGucCUUGaa-GAGCCCGCG- -5'
25756 5' -55.6 NC_005337.1 + 84444 0.66 0.893126
Target:  5'- aGGAGGaCgAGGAGCccgCggaGGGCGCg -3'
miRNA:   3'- aUCUUCgGgUCCUUGaa-Gag-CCCGCG- -5'
25756 5' -55.6 NC_005337.1 + 2361 0.66 0.893126
Target:  5'- -cGAuccGCgCCAGGuGCUcuaUCGGGUGCg -3'
miRNA:   3'- auCUu--CG-GGUCCuUGAag-AGCCCGCG- -5'
25756 5' -55.6 NC_005337.1 + 18709 0.66 0.893126
Target:  5'- --cGGGCCCcggcgAGGAGCUg--CGGcGCGCu -3'
miRNA:   3'- aucUUCGGG-----UCCUUGAagaGCC-CGCG- -5'
25756 5' -55.6 NC_005337.1 + 73897 0.66 0.893126
Target:  5'- gAGGucuGCCUGGGcAGCgagaugccgCUgGGGCGCa -3'
miRNA:   3'- aUCUu--CGGGUCC-UUGaa-------GAgCCCGCG- -5'
25756 5' -55.6 NC_005337.1 + 63362 0.66 0.892446
Target:  5'- gAGGAGCugcagaaCCAGGAcgugGCUUC-CGgaGGCGCc -3'
miRNA:   3'- aUCUUCG-------GGUCCU----UGAAGaGC--CCGCG- -5'
25756 5' -55.6 NC_005337.1 + 50369 0.66 0.890394
Target:  5'- gAGAcgGGCCCGGGcACgggcgccuggcgCggGGGCGCg -3'
miRNA:   3'- aUCU--UCGGGUCCuUGaa----------GagCCCGCG- -5'
25756 5' -55.6 NC_005337.1 + 59210 0.66 0.886226
Target:  5'- gGGAAGCUguucgacgacgaCGGGAACUUCcuggcggagaUCGGG-GCc -3'
miRNA:   3'- aUCUUCGG------------GUCCUUGAAG----------AGCCCgCG- -5'
25756 5' -55.6 NC_005337.1 + 19143 0.66 0.886226
Target:  5'- -cGAAGCCCGGGAuGCUcacggagaUCUCGGcCa- -3'
miRNA:   3'- auCUUCGGGUCCU-UGA--------AGAGCCcGcg -5'
25756 5' -55.6 NC_005337.1 + 95583 0.66 0.886226
Target:  5'- cGGGcAGUCCGGGGuCggC-CGGGUGCa -3'
miRNA:   3'- aUCU-UCGGGUCCUuGaaGaGCCCGCG- -5'
25756 5' -55.6 NC_005337.1 + 64257 0.66 0.886226
Target:  5'- cGGcGGCUCuGGGACc---CGGGCGCg -3'
miRNA:   3'- aUCuUCGGGuCCUUGaagaGCCCGCG- -5'
25756 5' -55.6 NC_005337.1 + 86266 0.66 0.87173
Target:  5'- -cGAAGgCCgugaacgaggAGGAGag-CUUGGGCGCg -3'
miRNA:   3'- auCUUCgGG----------UCCUUgaaGAGCCCGCG- -5'
25756 5' -55.6 NC_005337.1 + 121666 0.66 0.87173
Target:  5'- -cGAGGUCguGGAccuGCUcaUCcgcgCGGGCGCc -3'
miRNA:   3'- auCUUCGGguCCU---UGA--AGa---GCCCGCG- -5'
25756 5' -55.6 NC_005337.1 + 87265 0.66 0.87173
Target:  5'- -uGAuGCCCAGGcagauggagGugUUCgugCGGuGCGCg -3'
miRNA:   3'- auCUuCGGGUCC---------UugAAGa--GCC-CGCG- -5'
25756 5' -55.6 NC_005337.1 + 116122 0.66 0.864144
Target:  5'- cAGGAGCUCGuGGAGCUgcgCgccUGGGgGCc -3'
miRNA:   3'- aUCUUCGGGU-CCUUGAa--Ga--GCCCgCG- -5'
25756 5' -55.6 NC_005337.1 + 39430 0.66 0.864144
Target:  5'- cGGgcGCCCGcucGGGcCgcgCUCGGuGCGCa -3'
miRNA:   3'- aUCuuCGGGU---CCUuGaa-GAGCC-CGCG- -5'
25756 5' -55.6 NC_005337.1 + 105211 0.66 0.864144
Target:  5'- cUGGggGCCgcuGAGCUgcgCgcucgCGGGCGCc -3'
miRNA:   3'- -AUCuuCGGgucCUUGAa--Ga----GCCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.