miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25757 3' -52.9 NC_005337.1 + 2702 0.66 0.961114
Target:  5'- -aGCACG--UUGUCgggCUUGAgGUCCACg -3'
miRNA:   3'- caCGUGUcgAACAG---GAACUgCAGGUG- -5'
25757 3' -52.9 NC_005337.1 + 95478 0.66 0.961114
Target:  5'- cGUGCGCAGCcaGUCCaugcacucgGGCGcgucgggcUCCACc -3'
miRNA:   3'- -CACGUGUCGaaCAGGaa-------CUGC--------AGGUG- -5'
25757 3' -52.9 NC_005337.1 + 114502 0.66 0.961114
Target:  5'- -aGUccaGCGGCgucggGUCCaUGGgGUCCACg -3'
miRNA:   3'- caCG---UGUCGaa---CAGGaACUgCAGGUG- -5'
25757 3' -52.9 NC_005337.1 + 64249 0.66 0.95733
Target:  5'- gGUGaACAGgUaGUCCUUGAUGUCguCg -3'
miRNA:   3'- -CACgUGUCgAaCAGGAACUGCAGguG- -5'
25757 3' -52.9 NC_005337.1 + 109236 0.66 0.95733
Target:  5'- -cGCGCAGCagcUCCUcGGUGUCCGCc -3'
miRNA:   3'- caCGUGUCGaacAGGAaCUGCAGGUG- -5'
25757 3' -52.9 NC_005337.1 + 131002 0.66 0.9533
Target:  5'- -cGCaACGGCaUGUCCgagaucGACGccUCCACa -3'
miRNA:   3'- caCG-UGUCGaACAGGaa----CUGC--AGGUG- -5'
25757 3' -52.9 NC_005337.1 + 15539 0.66 0.9533
Target:  5'- -aGCGCAGCaucGUCUccaUGcCGUCCACc -3'
miRNA:   3'- caCGUGUCGaa-CAGGa--ACuGCAGGUG- -5'
25757 3' -52.9 NC_005337.1 + 38166 0.66 0.949022
Target:  5'- cUGCGCGGCcgcaUGUCCUccgccGCGcCCGCg -3'
miRNA:   3'- cACGUGUCGa---ACAGGAac---UGCaGGUG- -5'
25757 3' -52.9 NC_005337.1 + 123830 0.66 0.949022
Target:  5'- cUGgGCGGCUccGUCCc-GGCGUUCGCg -3'
miRNA:   3'- cACgUGUCGAa-CAGGaaCUGCAGGUG- -5'
25757 3' -52.9 NC_005337.1 + 5062 0.66 0.949022
Target:  5'- -cGCcacaGCAGCgc-UCUggGGCGUCCACg -3'
miRNA:   3'- caCG----UGUCGaacAGGaaCUGCAGGUG- -5'
25757 3' -52.9 NC_005337.1 + 4043 0.66 0.948581
Target:  5'- cGUGCAgCGGCgucuUGUCgagcgggcccgugUagUUGACGUCCGCg -3'
miRNA:   3'- -CACGU-GUCGa---ACAG-------------G--AACUGCAGGUG- -5'
25757 3' -52.9 NC_005337.1 + 85903 0.66 0.944492
Target:  5'- -gGCGCGGCUgacGUUCU---CGUCCACc -3'
miRNA:   3'- caCGUGUCGAa--CAGGAacuGCAGGUG- -5'
25757 3' -52.9 NC_005337.1 + 120981 0.66 0.944492
Target:  5'- -gGCACuGCUuggGUCCggcgaacacgGACGUCUGCu -3'
miRNA:   3'- caCGUGuCGAa--CAGGaa--------CUGCAGGUG- -5'
25757 3' -52.9 NC_005337.1 + 26084 0.66 0.944492
Target:  5'- -aGCGCGGCgcgGggaagcgCCgccgGAUGUCCACc -3'
miRNA:   3'- caCGUGUCGaa-Ca------GGaa--CUGCAGGUG- -5'
25757 3' -52.9 NC_005337.1 + 3498 0.67 0.939706
Target:  5'- gGUGCAgGaGgUUGUUgUggcgGGCGUCCACg -3'
miRNA:   3'- -CACGUgU-CgAACAGgAa---CUGCAGGUG- -5'
25757 3' -52.9 NC_005337.1 + 55201 0.67 0.939706
Target:  5'- cUGCGCAGCUUcGUgg-UGGCGcgCCGCa -3'
miRNA:   3'- cACGUGUCGAA-CAggaACUGCa-GGUG- -5'
25757 3' -52.9 NC_005337.1 + 16032 0.67 0.939706
Target:  5'- aUGCGCGGCgucUCCUcgGGC-UCCGCg -3'
miRNA:   3'- cACGUGUCGaacAGGAa-CUGcAGGUG- -5'
25757 3' -52.9 NC_005337.1 + 33781 0.67 0.934662
Target:  5'- -aGUACAuGC-UGUCCUUGAgCGagcUCCGCu -3'
miRNA:   3'- caCGUGU-CGaACAGGAACU-GC---AGGUG- -5'
25757 3' -52.9 NC_005337.1 + 106706 0.67 0.934662
Target:  5'- cGUGCACaAGC-UGUCgCUgccggaGACGUUCAUg -3'
miRNA:   3'- -CACGUG-UCGaACAG-GAa-----CUGCAGGUG- -5'
25757 3' -52.9 NC_005337.1 + 34182 0.67 0.929359
Target:  5'- gGUGCACGcGCUUcucccaGUCCUUGcuccaGUCCAg -3'
miRNA:   3'- -CACGUGU-CGAA------CAGGAACug---CAGGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.