miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25757 5' -55.4 NC_005337.1 + 104293 0.66 0.916174
Target:  5'- cGCGggcGGuCCgCGAGGgcGCGGCGGc-- -3'
miRNA:   3'- -CGCa--CCuGG-GCUCCaaCGUCGUCuuc -5'
25757 5' -55.4 NC_005337.1 + 33280 0.66 0.910197
Target:  5'- cGCGUGGAgaUCGAG--UGguGCAGGAu -3'
miRNA:   3'- -CGCACCUg-GGCUCcaACguCGUCUUc -5'
25757 5' -55.4 NC_005337.1 + 37694 0.66 0.903978
Target:  5'- cGUGUGGACgCCcgcgcgcguGAGGUcguccaccUGCAGCGGc-- -3'
miRNA:   3'- -CGCACCUG-GG---------CUCCA--------ACGUCGUCuuc -5'
25757 5' -55.4 NC_005337.1 + 18668 0.66 0.903978
Target:  5'- gGCGggcGGAUCCGAGGgccgGuCGGUcGGAGa -3'
miRNA:   3'- -CGCa--CCUGGGCUCCaa--C-GUCGuCUUC- -5'
25757 5' -55.4 NC_005337.1 + 96382 0.66 0.903978
Target:  5'- ---cGGucgcGCCCGAGcagGCGGCGGAGGa -3'
miRNA:   3'- cgcaCC----UGGGCUCcaaCGUCGUCUUC- -5'
25757 5' -55.4 NC_005337.1 + 103934 0.66 0.903978
Target:  5'- cGCGgGGcugguguacgaGCCCGAGGUcgucgaucUGguGgAGAAGg -3'
miRNA:   3'- -CGCaCC-----------UGGGCUCCA--------ACguCgUCUUC- -5'
25757 5' -55.4 NC_005337.1 + 98999 0.66 0.896861
Target:  5'- -gGUGGAgccgcccCCCGAGGUgcgcGCGGCcugcGAGGc -3'
miRNA:   3'- cgCACCU-------GGGCUCCAa---CGUCGu---CUUC- -5'
25757 5' -55.4 NC_005337.1 + 96085 0.66 0.890824
Target:  5'- gGCGUacacgGGGCaCGcGGgcGCGGCGGAGGa -3'
miRNA:   3'- -CGCA-----CCUGgGCuCCaaCGUCGUCUUC- -5'
25757 5' -55.4 NC_005337.1 + 67550 0.66 0.883895
Target:  5'- gGCGUG--UCCG-GGUUGaGGCGGAAGg -3'
miRNA:   3'- -CGCACcuGGGCuCCAACgUCGUCUUC- -5'
25757 5' -55.4 NC_005337.1 + 60175 0.67 0.876738
Target:  5'- aCGUGGAUCaCGuGGUcacccugcgggUGCGGCGcGggGg -3'
miRNA:   3'- cGCACCUGG-GCuCCA-----------ACGUCGU-CuuC- -5'
25757 5' -55.4 NC_005337.1 + 59186 0.67 0.876738
Target:  5'- uGCGUcgGGGCaCCGGcgacggcuGGaUGguGCAGAAGg -3'
miRNA:   3'- -CGCA--CCUG-GGCU--------CCaACguCGUCUUC- -5'
25757 5' -55.4 NC_005337.1 + 110450 0.67 0.853944
Target:  5'- cGCGggcaGGACcuCCGAGGcgUGCAGCAc--- -3'
miRNA:   3'- -CGCa---CCUG--GGCUCCa-ACGUCGUcuuc -5'
25757 5' -55.4 NC_005337.1 + 10878 0.68 0.829299
Target:  5'- cGCGUGGACuuGAGGgaugGaAGCAcGAu- -3'
miRNA:   3'- -CGCACCUGggCUCCaa--CgUCGU-CUuc -5'
25757 5' -55.4 NC_005337.1 + 832 0.68 0.827595
Target:  5'- cGCGcGGGCCCGGGcucgacgaagGCGGCGGGc- -3'
miRNA:   3'- -CGCaCCUGGGCUCcaa-------CGUCGUCUuc -5'
25757 5' -55.4 NC_005337.1 + 832 0.68 0.827595
Target:  5'- cGCGcGGGCCCGGGcucgacgaagGCGGCGGGc- -3'
miRNA:   3'- -CGCaCCUGGGCUCcaa-------CGUCGUCUuc -5'
25757 5' -55.4 NC_005337.1 + 87630 0.68 0.803
Target:  5'- cGCGca-GCCCcgacucgcgGAGGUUGguGCGGAAGa -3'
miRNA:   3'- -CGCaccUGGG---------CUCCAACguCGUCUUC- -5'
25757 5' -55.4 NC_005337.1 + 117817 0.68 0.792068
Target:  5'- gGCGUGGcGCCCGGGGacccgggcggggUGCGcacGCAGgcGg -3'
miRNA:   3'- -CGCACC-UGGGCUCCa-----------ACGU---CGUCuuC- -5'
25757 5' -55.4 NC_005337.1 + 133602 0.69 0.775275
Target:  5'- cGCGcaaGGGCCCGcuGcUGCuGCAGGAGg -3'
miRNA:   3'- -CGCa--CCUGGGCucCaACGuCGUCUUC- -5'
25757 5' -55.4 NC_005337.1 + 133602 0.69 0.775275
Target:  5'- cGCGcaaGGGCCCGcuGcUGCuGCAGGAGg -3'
miRNA:   3'- -CGCa--CCUGGGCucCaACGuCGUCUUC- -5'
25757 5' -55.4 NC_005337.1 + 82495 0.69 0.765759
Target:  5'- uCGaUGGACUCGucgcuGUUGCAGUGGAAGa -3'
miRNA:   3'- cGC-ACCUGGGCuc---CAACGUCGUCUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.