miRNA display CGI


Results 1 - 20 of 380 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25758 5' -59.8 NC_005337.1 + 13144 0.66 0.759278
Target:  5'- -aAGUGAUcacucuaucuccauCAUCUCCGCGGGCGccGCg -3'
miRNA:   3'- cgUCGCUGcu------------GUGGAGGCGCCCGU--CG- -5'
25758 5' -59.8 NC_005337.1 + 15484 0.66 0.758346
Target:  5'- uGUGGuCGuCGGCGCUgCUGCGGaCAGCg -3'
miRNA:   3'- -CGUC-GCuGCUGUGGaGGCGCCcGUCG- -5'
25758 5' -59.8 NC_005337.1 + 50883 0.66 0.758346
Target:  5'- --cGCGAgGACAUggUUUgGCGGGCGcGCg -3'
miRNA:   3'- cguCGCUgCUGUG--GAGgCGCCCGU-CG- -5'
25758 5' -59.8 NC_005337.1 + 11864 0.66 0.758346
Target:  5'- gGC-GCGGacaGGCGCCgcgcgCCGCcGcGCAGCa -3'
miRNA:   3'- -CGuCGCUg--CUGUGGa----GGCGcC-CGUCG- -5'
25758 5' -59.8 NC_005337.1 + 68463 0.66 0.758346
Target:  5'- -aAG-GACGGCACCUUCGacgccgccgcacCGGGCGccGCg -3'
miRNA:   3'- cgUCgCUGCUGUGGAGGC------------GCCCGU--CG- -5'
25758 5' -59.8 NC_005337.1 + 99559 0.66 0.758346
Target:  5'- cGC-GCGAgGAgGCC-CUGCGGcugcucguGCGGCg -3'
miRNA:   3'- -CGuCGCUgCUgUGGaGGCGCC--------CGUCG- -5'
25758 5' -59.8 NC_005337.1 + 46735 0.66 0.758346
Target:  5'- aCGGaCGACuucuuCAUCUCCaugaCGGGCAGCc -3'
miRNA:   3'- cGUC-GCUGcu---GUGGAGGc---GCCCGUCG- -5'
25758 5' -59.8 NC_005337.1 + 38917 0.66 0.758346
Target:  5'- uCGGC-ACGACGgCUCCcCGGugucGCAGCg -3'
miRNA:   3'- cGUCGcUGCUGUgGAGGcGCC----CGUCG- -5'
25758 5' -59.8 NC_005337.1 + 31017 0.66 0.758346
Target:  5'- uGUAGagguaGugGGcCACCg-CGCGGGCGcGCa -3'
miRNA:   3'- -CGUCg----CugCU-GUGGagGCGCCCGU-CG- -5'
25758 5' -59.8 NC_005337.1 + 11024 0.66 0.758346
Target:  5'- gGCuccGUGAUGaACAUguggCCgGCGGGCAGCu -3'
miRNA:   3'- -CGu--CGCUGC-UGUGga--GG-CGCCCGUCG- -5'
25758 5' -59.8 NC_005337.1 + 10448 0.66 0.756479
Target:  5'- cGCcGgGACGGaGCCgcccaggaacaCGUGGGCGGCg -3'
miRNA:   3'- -CGuCgCUGCUgUGGag---------GCGCCCGUCG- -5'
25758 5' -59.8 NC_005337.1 + 19969 0.66 0.754608
Target:  5'- cCGGCGccGCGAgAgCUCCuccaggagguccuCGGGCAGCa -3'
miRNA:   3'- cGUCGC--UGCUgUgGAGGc------------GCCCGUCG- -5'
25758 5' -59.8 NC_005337.1 + 124297 0.66 0.748969
Target:  5'- cGUGGcCGAgGACgcgGCCUCCGuCGcGGCgcaGGCg -3'
miRNA:   3'- -CGUC-GCUgCUG---UGGAGGC-GC-CCG---UCG- -5'
25758 5' -59.8 NC_005337.1 + 133577 0.66 0.748969
Target:  5'- gGCGuGCGcGCGAgcuuCGCCUCCGCGcGCaagGGCc -3'
miRNA:   3'- -CGU-CGC-UGCU----GUGGAGGCGCcCG---UCG- -5'
25758 5' -59.8 NC_005337.1 + 97652 0.66 0.748969
Target:  5'- cGCuGCGcucggucgcGCGcGCGCUccaggCCGCGGGCGuGCa -3'
miRNA:   3'- -CGuCGC---------UGC-UGUGGa----GGCGCCCGU-CG- -5'
25758 5' -59.8 NC_005337.1 + 133577 0.66 0.748969
Target:  5'- gGCGuGCGcGCGAgcuuCGCCUCCGCGcGCaagGGCc -3'
miRNA:   3'- -CGU-CGC-UGCU----GUGGAGGCGCcCG---UCG- -5'
25758 5' -59.8 NC_005337.1 + 40660 0.66 0.748969
Target:  5'- cGCAGUGG-GGCGCCcUCuaGGcGCGGCg -3'
miRNA:   3'- -CGUCGCUgCUGUGGaGGcgCC-CGUCG- -5'
25758 5' -59.8 NC_005337.1 + 65989 0.66 0.748969
Target:  5'- -uGGUG-CGAgGCCgugcgucCCGUGGGCgAGCg -3'
miRNA:   3'- cgUCGCuGCUgUGGa------GGCGCCCG-UCG- -5'
25758 5' -59.8 NC_005337.1 + 109924 0.66 0.748969
Target:  5'- --cGCGugGGCAugcUCUCCaGCGcGGuCAGCc -3'
miRNA:   3'- cguCGCugCUGU---GGAGG-CGC-CC-GUCG- -5'
25758 5' -59.8 NC_005337.1 + 93735 0.66 0.748969
Target:  5'- cCAGCGAcccgcCGGCgcaaGCCUCCucGCcGGUAGCg -3'
miRNA:   3'- cGUCGCU-----GCUG----UGGAGG--CGcCCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.