miRNA display CGI


Results 1 - 20 of 380 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25758 5' -59.8 NC_005337.1 + 655 0.73 0.327056
Target:  5'- aCGGCGACgGugACCUCCugcagcagcaGCGGGCccuuGCg -3'
miRNA:   3'- cGUCGCUG-CugUGGAGG----------CGCCCGu---CG- -5'
25758 5' -59.8 NC_005337.1 + 655 0.73 0.327056
Target:  5'- aCGGCGACgGugACCUCCugcagcagcaGCGGGCccuuGCg -3'
miRNA:   3'- cGUCGCUG-CugUGGAGG----------CGCCCGu---CG- -5'
25758 5' -59.8 NC_005337.1 + 830 0.67 0.700791
Target:  5'- cGCGcGCGGgcccgggcuCGACGaaggCgGCGGGCAGCg -3'
miRNA:   3'- -CGU-CGCU---------GCUGUgga-GgCGCCCGUCG- -5'
25758 5' -59.8 NC_005337.1 + 830 0.67 0.700791
Target:  5'- cGCGcGCGGgcccgggcuCGACGaaggCgGCGGGCAGCg -3'
miRNA:   3'- -CGU-CGCU---------GCUGUgga-GgCGCCCGUCG- -5'
25758 5' -59.8 NC_005337.1 + 921 0.71 0.448641
Target:  5'- cGCGGCGGCGGCGgCgaggCgGCGGaGC-GCg -3'
miRNA:   3'- -CGUCGCUGCUGUgGa---GgCGCC-CGuCG- -5'
25758 5' -59.8 NC_005337.1 + 921 0.71 0.448641
Target:  5'- cGCGGCGGCGGCGgCgaggCgGCGGaGC-GCg -3'
miRNA:   3'- -CGUCGCUGCUGUgGa---GgCGCC-CGuCG- -5'
25758 5' -59.8 NC_005337.1 + 960 0.71 0.431004
Target:  5'- gGCGGCGGCGGgGCUggagCgGCGgGGCuGGCg -3'
miRNA:   3'- -CGUCGCUGCUgUGGa---GgCGC-CCG-UCG- -5'
25758 5' -59.8 NC_005337.1 + 960 0.71 0.431004
Target:  5'- gGCGGCGGCGGgGCUggagCgGCGgGGCuGGCg -3'
miRNA:   3'- -CGUCGCUGCUgUGGa---GgCGC-CCG-UCG- -5'
25758 5' -59.8 NC_005337.1 + 1053 0.67 0.671155
Target:  5'- gGCGGCGG-GAgGCCggCGgGGGCGGa -3'
miRNA:   3'- -CGUCGCUgCUgUGGagGCgCCCGUCg -5'
25758 5' -59.8 NC_005337.1 + 1053 0.67 0.671155
Target:  5'- gGCGGCGG-GAgGCCggCGgGGGCGGa -3'
miRNA:   3'- -CGUCGCUgCUgUGGagGCgCCCGUCg -5'
25758 5' -59.8 NC_005337.1 + 1098 0.68 0.621258
Target:  5'- aCAGcCGGCGcaGCGCCgCCGCcgGGaGCAGCc -3'
miRNA:   3'- cGUC-GCUGC--UGUGGaGGCG--CC-CGUCG- -5'
25758 5' -59.8 NC_005337.1 + 1098 0.68 0.621258
Target:  5'- aCAGcCGGCGcaGCGCCgCCGCcgGGaGCAGCc -3'
miRNA:   3'- cGUC-GCUGC--UGUGGaGGCG--CC-CGUCG- -5'
25758 5' -59.8 NC_005337.1 + 1133 0.78 0.16485
Target:  5'- aGCAcGCGcGCGAcCAgCUCCGCGGGgAGCg -3'
miRNA:   3'- -CGU-CGC-UGCU-GUgGAGGCGCCCgUCG- -5'
25758 5' -59.8 NC_005337.1 + 1133 0.73 0.364743
Target:  5'- aGCAcGCGcGCGAcCAgCUCCGCGGGgaucaCAGCu -3'
miRNA:   3'- -CGU-CGC-UGCU-GUgGAGGCGCCC-----GUCG- -5'
25758 5' -59.8 NC_005337.1 + 1271 0.66 0.710571
Target:  5'- cGCAG-GAUGGC-CCgcggaggcgggUCgGCGGGCAGg -3'
miRNA:   3'- -CGUCgCUGCUGuGG-----------AGgCGCCCGUCg -5'
25758 5' -59.8 NC_005337.1 + 1521 0.7 0.475825
Target:  5'- cCAGCGcgucCGcCACUUCgugUGCGGGCGGCg -3'
miRNA:   3'- cGUCGCu---GCuGUGGAG---GCGCCCGUCG- -5'
25758 5' -59.8 NC_005337.1 + 1654 0.72 0.377421
Target:  5'- cGCGGCGACGAgcuuggcCGCCgCCGCGucguugcggugcccGGUGGCg -3'
miRNA:   3'- -CGUCGCUGCU-------GUGGaGGCGC--------------CCGUCG- -5'
25758 5' -59.8 NC_005337.1 + 1744 0.66 0.739495
Target:  5'- cGCGGCcacCGACAgCaggaCCGaccaGGGCGGCa -3'
miRNA:   3'- -CGUCGcu-GCUGUgGa---GGCg---CCCGUCG- -5'
25758 5' -59.8 NC_005337.1 + 1854 0.67 0.681075
Target:  5'- cGCAGCcGCGGCugaugagcuCCUCgaagauCGCGGGCcggGGCc -3'
miRNA:   3'- -CGUCGcUGCUGu--------GGAG------GCGCCCG---UCG- -5'
25758 5' -59.8 NC_005337.1 + 2105 0.72 0.41378
Target:  5'- cCAGCGccucCGuCGCgUCCGUGuGGCAGCg -3'
miRNA:   3'- cGUCGCu---GCuGUGgAGGCGC-CCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.