miRNA display CGI


Results 1 - 20 of 224 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25759 3' -55.2 NC_005337.1 + 870 0.66 0.912385
Target:  5'- gGGCgcgGCCGggCGGaagaGCGCGccGAGCAGGa -3'
miRNA:   3'- -UCG---UGGCuaGCCg---UGUGC--UUCGUCUg -5'
25759 3' -55.2 NC_005337.1 + 2825 0.66 0.912385
Target:  5'- aAGCccagGCCGAgcgCGGCcucCGCGGAGaCGGAg -3'
miRNA:   3'- -UCG----UGGCUa--GCCGu--GUGCUUC-GUCUg -5'
25759 3' -55.2 NC_005337.1 + 127482 0.66 0.912385
Target:  5'- cGGCugCGAUcCGGCggGCAuCGAcaccGGCGGGa -3'
miRNA:   3'- -UCGugGCUA-GCCG--UGU-GCU----UCGUCUg -5'
25759 3' -55.2 NC_005337.1 + 62757 0.66 0.912385
Target:  5'- cAGCuCCGcgacgCGGCgguggaACGCGAAGuCGGGCa -3'
miRNA:   3'- -UCGuGGCua---GCCG------UGUGCUUC-GUCUG- -5'
25759 3' -55.2 NC_005337.1 + 82109 0.66 0.912385
Target:  5'- cGCGCCG-UCgaagccgcgcuGGCGCAUGAGcGCGcGACa -3'
miRNA:   3'- uCGUGGCuAG-----------CCGUGUGCUU-CGU-CUG- -5'
25759 3' -55.2 NC_005337.1 + 20687 0.66 0.912385
Target:  5'- gGGCACCcGUCGaCGCAUGAuacAGCgucGGACu -3'
miRNA:   3'- -UCGUGGcUAGCcGUGUGCU---UCG---UCUG- -5'
25759 3' -55.2 NC_005337.1 + 43669 0.66 0.912385
Target:  5'- aGGCACCGGgaaaucgUGGC-C-CG-GGCGGACg -3'
miRNA:   3'- -UCGUGGCUa------GCCGuGuGCuUCGUCUG- -5'
25759 3' -55.2 NC_005337.1 + 870 0.66 0.912385
Target:  5'- gGGCgcgGCCGggCGGaagaGCGCGccGAGCAGGa -3'
miRNA:   3'- -UCG---UGGCuaGCCg---UGUGC--UUCGUCUg -5'
25759 3' -55.2 NC_005337.1 + 41376 0.66 0.912385
Target:  5'- uGcCGCCGAcgcCGGCaaccGCGCGcGGGCAGAUg -3'
miRNA:   3'- uC-GUGGCUa--GCCG----UGUGC-UUCGUCUG- -5'
25759 3' -55.2 NC_005337.1 + 59193 0.66 0.912385
Target:  5'- gGGCACCGGcgaCGGCugGauggugcaGAAggccGCGGACa -3'
miRNA:   3'- -UCGUGGCUa--GCCGugUg-------CUU----CGUCUG- -5'
25759 3' -55.2 NC_005337.1 + 60911 0.66 0.912385
Target:  5'- gGGCACggccaCGGUCgGGCACGCGAcGCGc-- -3'
miRNA:   3'- -UCGUG-----GCUAG-CCGUGUGCUuCGUcug -5'
25759 3' -55.2 NC_005337.1 + 34374 0.66 0.912385
Target:  5'- gAGCGCCGccgCGGCGagccagaGGAGCGuGGCg -3'
miRNA:   3'- -UCGUGGCua-GCCGUgug----CUUCGU-CUG- -5'
25759 3' -55.2 NC_005337.1 + 63302 0.66 0.906208
Target:  5'- gAGC-CCGcUCaGCAC-CGAgugcAGCAGGCg -3'
miRNA:   3'- -UCGuGGCuAGcCGUGuGCU----UCGUCUG- -5'
25759 3' -55.2 NC_005337.1 + 121693 0.66 0.906208
Target:  5'- gGGCGCCaa-CGugaacGCGCGCGGggaGGCGGACa -3'
miRNA:   3'- -UCGUGGcuaGC-----CGUGUGCU---UCGUCUG- -5'
25759 3' -55.2 NC_005337.1 + 120303 0.66 0.906208
Target:  5'- gAGCACgGcggcgCGGUACACGGucGCcGACg -3'
miRNA:   3'- -UCGUGgCua---GCCGUGUGCUu-CGuCUG- -5'
25759 3' -55.2 NC_005337.1 + 923 0.66 0.906208
Target:  5'- cGGCGgCGG-CGGCGaggcgGCGGAGCgcGGACa -3'
miRNA:   3'- -UCGUgGCUaGCCGUg----UGCUUCG--UCUG- -5'
25759 3' -55.2 NC_005337.1 + 7131 0.66 0.906208
Target:  5'- cGCGCgGAUCaGCACGCGGAcgauguccGCcucGGACc -3'
miRNA:   3'- uCGUGgCUAGcCGUGUGCUU--------CG---UCUG- -5'
25759 3' -55.2 NC_005337.1 + 13277 0.66 0.906208
Target:  5'- aGGCuGCCGAgggCGauGCGCAgGAGgGCGGGCu -3'
miRNA:   3'- -UCG-UGGCUa--GC--CGUGUgCUU-CGUCUG- -5'
25759 3' -55.2 NC_005337.1 + 87781 0.66 0.906208
Target:  5'- cGGCGCCGcgguGUCGGC-CGC---GCGGGCc -3'
miRNA:   3'- -UCGUGGC----UAGCCGuGUGcuuCGUCUG- -5'
25759 3' -55.2 NC_005337.1 + 38334 0.66 0.906208
Target:  5'- cGGCGCCGggCGaGUACGCGcuGCGcaucacgcacacGACg -3'
miRNA:   3'- -UCGUGGCuaGC-CGUGUGCuuCGU------------CUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.