miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25759 5' -60.1 NC_005337.1 + 105763 0.66 0.744581
Target:  5'- gCGCCuGcCCCAcGCAGUGCCGc--- -3'
miRNA:   3'- aGCGGcCuGGGUuCGUCACGGCcacc -5'
25759 5' -60.1 NC_005337.1 + 88069 0.66 0.744581
Target:  5'- cUCGUCGGcgaGCUCAuGCAG-GCC-GUGGa -3'
miRNA:   3'- -AGCGGCC---UGGGUuCGUCaCGGcCACC- -5'
25759 5' -60.1 NC_005337.1 + 131394 0.66 0.744581
Target:  5'- -aGCCGGACgCCGccGGCcacGCUGGUGa -3'
miRNA:   3'- agCGGCCUG-GGU--UCGucaCGGCCACc -5'
25759 5' -60.1 NC_005337.1 + 41850 0.66 0.744581
Target:  5'- cUCGUCGGGCggGAGCGG-GCUcGUGGc -3'
miRNA:   3'- -AGCGGCCUGggUUCGUCaCGGcCACC- -5'
25759 5' -60.1 NC_005337.1 + 20786 0.66 0.744581
Target:  5'- uUCGCgGGGa-CGGGC-GUGCCGGagcUGGa -3'
miRNA:   3'- -AGCGgCCUggGUUCGuCACGGCC---ACC- -5'
25759 5' -60.1 NC_005337.1 + 1671 0.66 0.744581
Target:  5'- cCGCC--GCCgCGucguuGCGGUGCCcGGUGGc -3'
miRNA:   3'- aGCGGccUGG-GUu----CGUCACGG-CCACC- -5'
25759 5' -60.1 NC_005337.1 + 89192 0.66 0.735084
Target:  5'- gUGCCGGgcgcucgccGCCCGAGCAGUcGCUGu--- -3'
miRNA:   3'- aGCGGCC---------UGGGUUCGUCA-CGGCcacc -5'
25759 5' -60.1 NC_005337.1 + 69274 0.66 0.725501
Target:  5'- gUCGCgguccuCGGACUCcuuuaucaGAcGCAGgaGCCGGUGGa -3'
miRNA:   3'- -AGCG------GCCUGGG--------UU-CGUCa-CGGCCACC- -5'
25759 5' -60.1 NC_005337.1 + 19535 0.66 0.725501
Target:  5'- gUGCCGGAgCCCGuccAGCAcGcGCCGGa-- -3'
miRNA:   3'- aGCGGCCU-GGGU---UCGU-CaCGGCCacc -5'
25759 5' -60.1 NC_005337.1 + 92877 0.66 0.725501
Target:  5'- aCGCCGGacgucaucuGCCCGcgcGCGGuUGCCGGcgucGGc -3'
miRNA:   3'- aGCGGCC---------UGGGUu--CGUC-ACGGCCa---CC- -5'
25759 5' -60.1 NC_005337.1 + 50418 0.66 0.725501
Target:  5'- gUCGCCaaGGCCCcaGAGUcGUcGCCGGUGc -3'
miRNA:   3'- -AGCGGc-CUGGG--UUCGuCA-CGGCCACc -5'
25759 5' -60.1 NC_005337.1 + 71566 0.66 0.722611
Target:  5'- cCGCCGGAugauggagacgcugUCCAAGCugggcuacGUGCUGGUc- -3'
miRNA:   3'- aGCGGCCU--------------GGGUUCGu-------CACGGCCAcc -5'
25759 5' -60.1 NC_005337.1 + 122041 0.66 0.715843
Target:  5'- cCGUCGGugCCG---AGUGCCGcgucGUGGa -3'
miRNA:   3'- aGCGGCCugGGUucgUCACGGC----CACC- -5'
25759 5' -60.1 NC_005337.1 + 96375 0.66 0.715843
Target:  5'- aUCGacCCGGucgcGCCCGAGCAGgcgGCggaggacgaGGUGGc -3'
miRNA:   3'- -AGC--GGCC----UGGGUUCGUCa--CGg--------CCACC- -5'
25759 5' -60.1 NC_005337.1 + 78378 0.66 0.710015
Target:  5'- aCGCUGaGGCCCucGCGGaUGCugcgccgcaccgcauCGGUGGc -3'
miRNA:   3'- aGCGGC-CUGGGuuCGUC-ACG---------------GCCACC- -5'
25759 5' -60.1 NC_005337.1 + 84574 0.66 0.706116
Target:  5'- gCGCCGaGCCCgGGGCgcuGGUGUgGGUGa -3'
miRNA:   3'- aGCGGCcUGGG-UUCG---UCACGgCCACc -5'
25759 5' -60.1 NC_005337.1 + 94744 0.66 0.706116
Target:  5'- gCGCCGGcagccacgACCgCGAGCuG-GCCcgcGGUGGg -3'
miRNA:   3'- aGCGGCC--------UGG-GUUCGuCaCGG---CCACC- -5'
25759 5' -60.1 NC_005337.1 + 102923 0.66 0.706116
Target:  5'- cUC-CUGcGACCaCAAGCuGGUGCUGGUGc -3'
miRNA:   3'- -AGcGGC-CUGG-GUUCG-UCACGGCCACc -5'
25759 5' -60.1 NC_005337.1 + 2572 0.66 0.70514
Target:  5'- -aGCgCGGACuCCAuGGCGGccagcgcgguuauUGCCGGUGc -3'
miRNA:   3'- agCG-GCCUG-GGU-UCGUC-------------ACGGCCACc -5'
25759 5' -60.1 NC_005337.1 + 103329 0.66 0.70514
Target:  5'- gCGCCGGgcggcucACCCGccCGcUGCUGGUGGu -3'
miRNA:   3'- aGCGGCC-------UGGGUucGUcACGGCCACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.