miRNA display CGI


Results 1 - 20 of 102 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25760 5' -50 NC_005337.1 + 73460 0.66 0.996598
Target:  5'- -cGCgGCGGUGcCGCGUgcccGCGGAGg -3'
miRNA:   3'- caUGgCGUCAUaGCGCAac--UGCUUCg -5'
25760 5' -50 NC_005337.1 + 37310 0.66 0.996598
Target:  5'- -gGCCGCgAGgagcugGUCGCGcgcGGCG-AGCa -3'
miRNA:   3'- caUGGCG-UCa-----UAGCGCaa-CUGCuUCG- -5'
25760 5' -50 NC_005337.1 + 68205 0.66 0.996598
Target:  5'- -cGCCGCGGc--CGCGUccGCGAuGCg -3'
miRNA:   3'- caUGGCGUCauaGCGCAacUGCUuCG- -5'
25760 5' -50 NC_005337.1 + 2450 0.66 0.996598
Target:  5'- gGUACgugUGCAGcgcCGUGUUGcCGAAGCc -3'
miRNA:   3'- -CAUG---GCGUCauaGCGCAACuGCUUCG- -5'
25760 5' -50 NC_005337.1 + 29436 0.66 0.995995
Target:  5'- -cGCCGCAGUucUCGCa--GACGAAu- -3'
miRNA:   3'- caUGGCGUCAu-AGCGcaaCUGCUUcg -5'
25760 5' -50 NC_005337.1 + 40756 0.66 0.995995
Target:  5'- -gGCCGCAucGUGUacgGCG-UGAUGAAGg -3'
miRNA:   3'- caUGGCGU--CAUAg--CGCaACUGCUUCg -5'
25760 5' -50 NC_005337.1 + 131392 0.66 0.995995
Target:  5'- -gACCGCGGggccgugAUCGUGUucccgcUGGCGcgcGGCu -3'
miRNA:   3'- caUGGCGUCa------UAGCGCA------ACUGCu--UCG- -5'
25760 5' -50 NC_005337.1 + 41431 0.66 0.995995
Target:  5'- cGUGCCGaac-GUCGCGUUGA-GcAGCu -3'
miRNA:   3'- -CAUGGCgucaUAGCGCAACUgCuUCG- -5'
25760 5' -50 NC_005337.1 + 38693 0.66 0.995995
Target:  5'- -cGCCGCcuGGUGUCGgcggcggcccguCGUccUGACGggGg -3'
miRNA:   3'- caUGGCG--UCAUAGC------------GCA--ACUGCuuCg -5'
25760 5' -50 NC_005337.1 + 62310 0.66 0.995995
Target:  5'- cGUACUGCAGgagGUUGCGcaUGuuGAAGg -3'
miRNA:   3'- -CAUGGCGUCa--UAGCGCa-ACugCUUCg -5'
25760 5' -50 NC_005337.1 + 23435 0.66 0.995995
Target:  5'- -gACCGCGGUGUggagcagcCGCcugGGCGAcuacAGCg -3'
miRNA:   3'- caUGGCGUCAUA--------GCGcaaCUGCU----UCG- -5'
25760 5' -50 NC_005337.1 + 64375 0.66 0.995995
Target:  5'- -cGCgCGCAGgagCaCGUUGuCGGAGCg -3'
miRNA:   3'- caUG-GCGUCauaGcGCAACuGCUUCG- -5'
25760 5' -50 NC_005337.1 + 99004 0.66 0.99593
Target:  5'- -aGCCGCcccccgaGGUGcgCGCGgccuGCGAGGCg -3'
miRNA:   3'- caUGGCG-------UCAUa-GCGCaac-UGCUUCG- -5'
25760 5' -50 NC_005337.1 + 91566 0.66 0.995308
Target:  5'- cGUACCgGUAcaccucggggucGUAUCGC-UUGGCGAGGa -3'
miRNA:   3'- -CAUGG-CGU------------CAUAGCGcAACUGCUUCg -5'
25760 5' -50 NC_005337.1 + 11853 0.66 0.995308
Target:  5'- uGUGCCGCAucggCGCGgacaGGCGccGCg -3'
miRNA:   3'- -CAUGGCGUcauaGCGCaa--CUGCuuCG- -5'
25760 5' -50 NC_005337.1 + 68345 0.66 0.994609
Target:  5'- cGUGCCGgAGgacggcgcggucgcgAUCGCGUggaGCGAGGg -3'
miRNA:   3'- -CAUGGCgUCa--------------UAGCGCAac-UGCUUCg -5'
25760 5' -50 NC_005337.1 + 63044 0.66 0.994527
Target:  5'- -gACCggGCGGUAguUCGUGUcgaUGAUGAAGg -3'
miRNA:   3'- caUGG--CGUCAU--AGCGCA---ACUGCUUCg -5'
25760 5' -50 NC_005337.1 + 122053 0.66 0.994527
Target:  5'- aGUGCCGC---GUCGUGgaGACGcuGCc -3'
miRNA:   3'- -CAUGGCGucaUAGCGCaaCUGCuuCG- -5'
25760 5' -50 NC_005337.1 + 96924 0.66 0.994527
Target:  5'- uGUACCccaacCAGaagAUCGUGgugGACGAGGUg -3'
miRNA:   3'- -CAUGGc----GUCa--UAGCGCaa-CUGCUUCG- -5'
25760 5' -50 NC_005337.1 + 123611 0.66 0.994527
Target:  5'- cGUGCCGCGc--UCGCGggugcUGACGcucgugGAGCu -3'
miRNA:   3'- -CAUGGCGUcauAGCGCa----ACUGC------UUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.