miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25762 5' -53.1 NC_005337.1 + 97816 0.67 0.942214
Target:  5'- aGGUGGUGAagAcCGUgCGUCCgcCCGCg -3'
miRNA:   3'- aCCACUACUagUaGCG-GUAGGa-GGCG- -5'
25762 5' -53.1 NC_005337.1 + 35091 0.67 0.937384
Target:  5'- cGGcGcgGAUCucgaCGCgCAUCgUCCGCg -3'
miRNA:   3'- aCCaCuaCUAGua--GCG-GUAGgAGGCG- -5'
25762 5' -53.1 NC_005337.1 + 71057 0.67 0.932303
Target:  5'- gUGGcGAacaugcaccUGcgCcgCGCCGUCUUCUGCa -3'
miRNA:   3'- -ACCaCU---------ACuaGuaGCGGUAGGAGGCG- -5'
25762 5' -53.1 NC_005337.1 + 34782 0.67 0.932303
Target:  5'- cGGcGAcagGAUCAuggUCGCCAUCUgcgcgUCGCg -3'
miRNA:   3'- aCCaCUa--CUAGU---AGCGGUAGGa----GGCG- -5'
25762 5' -53.1 NC_005337.1 + 52759 0.67 0.932303
Target:  5'- aGGUGGUGcUCAUCuCCGauaUCCgguccaaCCGCg -3'
miRNA:   3'- aCCACUACuAGUAGcGGU---AGGa------GGCG- -5'
25762 5' -53.1 NC_005337.1 + 88875 0.67 0.932303
Target:  5'- cGGuUGAguccagGAUCuucguccacgCGCCGUCCUCCa- -3'
miRNA:   3'- aCC-ACUa-----CUAGua--------GCGGUAGGAGGcg -5'
25762 5' -53.1 NC_005337.1 + 54455 0.67 0.932303
Target:  5'- gGGUacaaGAUGAUCAggcacgUCGCCAUaaaCUCCu- -3'
miRNA:   3'- aCCA----CUACUAGU------AGCGGUAg--GAGGcg -5'
25762 5' -53.1 NC_005337.1 + 7006 0.67 0.926971
Target:  5'- aUGGcGcgGAcgUCcgCGCCcgCCUCCaGCa -3'
miRNA:   3'- -ACCaCuaCU--AGuaGCGGuaGGAGG-CG- -5'
25762 5' -53.1 NC_005337.1 + 77168 0.68 0.921386
Target:  5'- gUGGUacagcuuccgGAaGAUCAgcgUCGCCGUCUcgcgcgugaUCCGCa -3'
miRNA:   3'- -ACCA----------CUaCUAGU---AGCGGUAGG---------AGGCG- -5'
25762 5' -53.1 NC_005337.1 + 118397 0.68 0.921386
Target:  5'- aUGGcGAUGAUCAUCaCCA-CgUCgCGCa -3'
miRNA:   3'- -ACCaCUACUAGUAGcGGUaGgAG-GCG- -5'
25762 5' -53.1 NC_005337.1 + 63490 0.68 0.921386
Target:  5'- cGGUcgcGUGAagG-CGCUGUCCUCCGUg -3'
miRNA:   3'- aCCAc--UACUagUaGCGGUAGGAGGCG- -5'
25762 5' -53.1 NC_005337.1 + 16769 0.68 0.91555
Target:  5'- cGGcUGAUGucgugcaccgCGUCGCCGUCCaUCaGCa -3'
miRNA:   3'- aCC-ACUACua--------GUAGCGGUAGG-AGgCG- -5'
25762 5' -53.1 NC_005337.1 + 68815 0.68 0.91555
Target:  5'- cUGGUGGacGAguaCAaCGCCGucgcgcccuggcUCCUCCGCg -3'
miRNA:   3'- -ACCACUa-CUa--GUaGCGGU------------AGGAGGCG- -5'
25762 5' -53.1 NC_005337.1 + 34843 0.68 0.914953
Target:  5'- --aUGAUGGggCAUauaugcggcggcgCGCCAUCCUCCGa -3'
miRNA:   3'- accACUACUa-GUA-------------GCGGUAGGAGGCg -5'
25762 5' -53.1 NC_005337.1 + 70809 0.68 0.909464
Target:  5'- cUGGUGAgcGUCAUCGacgaCAUCCagCCGa -3'
miRNA:   3'- -ACCACUacUAGUAGCg---GUAGGa-GGCg -5'
25762 5' -53.1 NC_005337.1 + 4278 0.68 0.903128
Target:  5'- gUGGuUGAUGAUCAUguuggccagCGgCGUCCUgCCGg -3'
miRNA:   3'- -ACC-ACUACUAGUA---------GCgGUAGGA-GGCg -5'
25762 5' -53.1 NC_005337.1 + 73426 0.68 0.896547
Target:  5'- gUGGUGcucggggaGAUCGUgCGCCAgUUCUUCGCg -3'
miRNA:   3'- -ACCACua------CUAGUA-GCGGU-AGGAGGCG- -5'
25762 5' -53.1 NC_005337.1 + 91251 0.68 0.896547
Target:  5'- aGGUGGaccugGAUCAgcugcgcgagGCCAUCCucUCCGCc -3'
miRNA:   3'- aCCACUa----CUAGUag--------CGGUAGG--AGGCG- -5'
25762 5' -53.1 NC_005337.1 + 33365 0.69 0.88266
Target:  5'- cGGUGGUGcacauguagucGUCGgagCGCCG-CC-CCGCg -3'
miRNA:   3'- aCCACUAC-----------UAGUa--GCGGUaGGaGGCG- -5'
25762 5' -53.1 NC_005337.1 + 96570 0.69 0.875362
Target:  5'- cGGUGGUGAagAgcUCGgCGUCCUggacgCCGCc -3'
miRNA:   3'- aCCACUACUagU--AGCgGUAGGA-----GGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.