miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25771 5' -55.9 NC_005337.1 + 118814 0.66 0.916779
Target:  5'- cGCCGUcGGUGGCCAGccagugucuccuGGAcCGguauCUCGUc -3'
miRNA:   3'- -CGGCA-CCACUGGUU------------CCU-GCac--GAGCG- -5'
25771 5' -55.9 NC_005337.1 + 116923 0.66 0.916779
Target:  5'- cGCCuaaGUGuUGACCGAGGcgaGCGgauCUCGCc -3'
miRNA:   3'- -CGG---CACcACUGGUUCC---UGCac-GAGCG- -5'
25771 5' -55.9 NC_005337.1 + 110859 0.66 0.916779
Target:  5'- cCCGU--UGA-CGGGGAUGUGCUUGUa -3'
miRNA:   3'- cGGCAccACUgGUUCCUGCACGAGCG- -5'
25771 5' -55.9 NC_005337.1 + 88922 0.66 0.916779
Target:  5'- aCCGUGcUGACCGucGucuGCGaGCUCGCg -3'
miRNA:   3'- cGGCACcACUGGUucC---UGCaCGAGCG- -5'
25771 5' -55.9 NC_005337.1 + 22185 0.66 0.916779
Target:  5'- cGCCcugGUGGUGuCCGAcuGGugGUGUguguuuaGCa -3'
miRNA:   3'- -CGG---CACCACuGGUU--CCugCACGag-----CG- -5'
25771 5' -55.9 NC_005337.1 + 127978 0.66 0.916779
Target:  5'- uGCgCGaGGUGcgcugcaacGCCGAcacgacgcugcuGGACGUGCUcCGCg -3'
miRNA:   3'- -CG-GCaCCAC---------UGGUU------------CCUGCACGA-GCG- -5'
25771 5' -55.9 NC_005337.1 + 53923 0.66 0.916779
Target:  5'- cGCUGgacGGUGcgGCCAucGGGGaguucUGCUCGCg -3'
miRNA:   3'- -CGGCa--CCAC--UGGU--UCCUgc---ACGAGCG- -5'
25771 5' -55.9 NC_005337.1 + 49588 0.66 0.916779
Target:  5'- uCCGUGGgaucggcGACCAguGGGAgGcGCcCGCg -3'
miRNA:   3'- cGGCACCa------CUGGU--UCCUgCaCGaGCG- -5'
25771 5' -55.9 NC_005337.1 + 116046 0.66 0.910908
Target:  5'- cGCgCGgcaGGUGAUCAAcgcguucacGGACGgGCUCuGCa -3'
miRNA:   3'- -CG-GCa--CCACUGGUU---------CCUGCaCGAG-CG- -5'
25771 5' -55.9 NC_005337.1 + 40518 0.66 0.910908
Target:  5'- -gCGUGGUGGCgcuaccggCGAGGAg--GCUUGCg -3'
miRNA:   3'- cgGCACCACUG--------GUUCCUgcaCGAGCG- -5'
25771 5' -55.9 NC_005337.1 + 28955 0.66 0.910908
Target:  5'- cGCaCGUGcUGGgCAacuGGGGCGUGCgcaGCg -3'
miRNA:   3'- -CG-GCACcACUgGU---UCCUGCACGag-CG- -5'
25771 5' -55.9 NC_005337.1 + 106509 0.66 0.910908
Target:  5'- uCCGUGGUGuACCugcGGuuCGUGCa-GCa -3'
miRNA:   3'- cGGCACCAC-UGGuu-CCu-GCACGagCG- -5'
25771 5' -55.9 NC_005337.1 + 70434 0.66 0.904802
Target:  5'- gGCCcUGGUGcgcguccuCCAGGGuC-UGCUCGUa -3'
miRNA:   3'- -CGGcACCACu-------GGUUCCuGcACGAGCG- -5'
25771 5' -55.9 NC_005337.1 + 70618 0.66 0.904802
Target:  5'- uGCuCGUGGacgucuCCGAgacGGACGUGCUCu- -3'
miRNA:   3'- -CG-GCACCacu---GGUU---CCUGCACGAGcg -5'
25771 5' -55.9 NC_005337.1 + 67305 0.66 0.904802
Target:  5'- uCCGUGGagcgcgUGGCCGAGGACcaggucaugGUGUacaCGCc -3'
miRNA:   3'- cGGCACC------ACUGGUUCCUG---------CACGa--GCG- -5'
25771 5' -55.9 NC_005337.1 + 14820 0.66 0.904802
Target:  5'- aCUGgacGGUGACCAGGuagggcucGAUGUuCUCGCg -3'
miRNA:   3'- cGGCa--CCACUGGUUC--------CUGCAcGAGCG- -5'
25771 5' -55.9 NC_005337.1 + 85285 0.66 0.899106
Target:  5'- uGCCGgc--GACCugcugguccuugacGGugGUGCUCGCc -3'
miRNA:   3'- -CGGCaccaCUGGuu------------CCugCACGAGCG- -5'
25771 5' -55.9 NC_005337.1 + 127592 0.66 0.898461
Target:  5'- aGCCGUGGacgucGCCGAGu-CGUGCUgugggUGCa -3'
miRNA:   3'- -CGGCACCac---UGGUUCcuGCACGA-----GCG- -5'
25771 5' -55.9 NC_005337.1 + 65178 0.66 0.89189
Target:  5'- -aCGaGGUGcACCAcgAGGuagagcuCGUGCUCGUg -3'
miRNA:   3'- cgGCaCCAC-UGGU--UCCu------GCACGAGCG- -5'
25771 5' -55.9 NC_005337.1 + 122380 0.66 0.89189
Target:  5'- cGCaUGUGcGUG-CgCGAGGuCGUGCUgCGCg -3'
miRNA:   3'- -CG-GCAC-CACuG-GUUCCuGCACGA-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.