miRNA display CGI


Results 1 - 20 of 293 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25776 3' -64.8 NC_005337.1 + 11265 0.66 0.538355
Target:  5'- cCGCgGGGAUGUGuCGGCCcucGCCCa -3'
miRNA:   3'- cGCGgCCUUGCGCcGCCGGca-CGGGc -5'
25776 3' -64.8 NC_005337.1 + 121812 0.66 0.537421
Target:  5'- gGCGCUGGAcgaguucgguaugACGcCGGCcGaCGUGCUCGu -3'
miRNA:   3'- -CGCGGCCU-------------UGC-GCCGcCgGCACGGGC- -5'
25776 3' -64.8 NC_005337.1 + 64237 0.66 0.537421
Target:  5'- aGCGCCucuuugcGGcGCuGCGGCGGCUcuggGaCCCGg -3'
miRNA:   3'- -CGCGG-------CCuUG-CGCCGCCGGca--C-GGGC- -5'
25776 3' -64.8 NC_005337.1 + 99606 0.66 0.529042
Target:  5'- uGCGCCGuGAGCaaCGGCuacGUCGUGCgCGu -3'
miRNA:   3'- -CGCGGC-CUUGc-GCCGc--CGGCACGgGC- -5'
25776 3' -64.8 NC_005337.1 + 1569 0.66 0.529042
Target:  5'- cGCGCau-GGCGCGGCccaGGuuGUGCgCGa -3'
miRNA:   3'- -CGCGgccUUGCGCCG---CCggCACGgGC- -5'
25776 3' -64.8 NC_005337.1 + 71480 0.66 0.529042
Target:  5'- uCGCUGGAcgccACGcCGGaC-GCgGUGCCCGa -3'
miRNA:   3'- cGCGGCCU----UGC-GCC-GcCGgCACGGGC- -5'
25776 3' -64.8 NC_005337.1 + 68185 0.66 0.529042
Target:  5'- aCGCCcuGAGCGCGGCcccgggggcGCCGcugcggGCCCGc -3'
miRNA:   3'- cGCGGc-CUUGCGCCGc--------CGGCa-----CGGGC- -5'
25776 3' -64.8 NC_005337.1 + 96015 0.66 0.529042
Target:  5'- aCGCCGcGAGCGCGaacGCGcGCCGcGUCuCGu -3'
miRNA:   3'- cGCGGC-CUUGCGC---CGC-CGGCaCGG-GC- -5'
25776 3' -64.8 NC_005337.1 + 33607 0.66 0.529042
Target:  5'- nGCGgCGcGAACGCGGCguGGUucacgaUGUGCuuGg -3'
miRNA:   3'- -CGCgGC-CUUGCGCCG--CCG------GCACGggC- -5'
25776 3' -64.8 NC_005337.1 + 67517 0.66 0.528114
Target:  5'- aGCGgcCCGcGcgUGCGGCGGUuggugaaguagggCGUGUCCGg -3'
miRNA:   3'- -CGC--GGC-CuuGCGCCGCCG-------------GCACGGGC- -5'
25776 3' -64.8 NC_005337.1 + 738 0.66 0.519789
Target:  5'- cGCgGgCGaGAGCGCGGCGcCCGcgGCCuCGa -3'
miRNA:   3'- -CG-CgGC-CUUGCGCCGCcGGCa-CGG-GC- -5'
25776 3' -64.8 NC_005337.1 + 738 0.66 0.519789
Target:  5'- cGCgGgCGaGAGCGCGGCGcCCGcgGCCuCGa -3'
miRNA:   3'- -CG-CgGC-CUUGCGCCGCcGGCa-CGG-GC- -5'
25776 3' -64.8 NC_005337.1 + 910 0.66 0.519789
Target:  5'- aGCGCgacGAGCGCGGCGGCgGcgGCg-- -3'
miRNA:   3'- -CGCGgc-CUUGCGCCGCCGgCa-CGggc -5'
25776 3' -64.8 NC_005337.1 + 128270 0.66 0.519789
Target:  5'- aCGCCGcugcACGCGGCGGUcugcaacgcgCGcGCCUGg -3'
miRNA:   3'- cGCGGCcu--UGCGCCGCCG----------GCaCGGGC- -5'
25776 3' -64.8 NC_005337.1 + 117265 0.66 0.519789
Target:  5'- cGCGCUGG-ACGUcGaGGCCccGCCCGa -3'
miRNA:   3'- -CGCGGCCuUGCGcCgCCGGcaCGGGC- -5'
25776 3' -64.8 NC_005337.1 + 56525 0.66 0.519789
Target:  5'- cGCGCCaagacGGccuCGUGGCgugagucccuGGCgGUGCCCu -3'
miRNA:   3'- -CGCGG-----CCuu-GCGCCG----------CCGgCACGGGc -5'
25776 3' -64.8 NC_005337.1 + 62376 0.66 0.519789
Target:  5'- uCGUCGaGGACGCGGCGGaCGagaaaGUCCa -3'
miRNA:   3'- cGCGGC-CUUGCGCCGCCgGCa----CGGGc -5'
25776 3' -64.8 NC_005337.1 + 910 0.66 0.519789
Target:  5'- aGCGCgacGAGCGCGGCGGCgGcgGCg-- -3'
miRNA:   3'- -CGCGgc-CUUGCGCCGCCGgCa-CGggc -5'
25776 3' -64.8 NC_005337.1 + 3014 0.66 0.519789
Target:  5'- gGCuCCGGcAGCGCGuGCGcGCCGaugUGCgCGa -3'
miRNA:   3'- -CGcGGCC-UUGCGC-CGC-CGGC---ACGgGC- -5'
25776 3' -64.8 NC_005337.1 + 12868 0.66 0.518867
Target:  5'- uCGCCGGGgagccgcaaguagACGUGgaGCGGCgugcacuuguaCGUGCCCu -3'
miRNA:   3'- cGCGGCCU-------------UGCGC--CGCCG-----------GCACGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.