miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25776 5' -55.2 NC_005337.1 + 67245 0.66 0.927651
Target:  5'- aGCGGaUGGUCuccuggauguaguugAacuuguaguagcGCGACUUgAGCCCCGc -3'
miRNA:   3'- gCGCC-ACCAG---------------U------------CGUUGAAgUUGGGGC- -5'
25776 5' -55.2 NC_005337.1 + 54312 0.66 0.925496
Target:  5'- gCGUGGUGGaCAcCAGCggCGACgCCGu -3'
miRNA:   3'- -GCGCCACCaGUcGUUGaaGUUGgGGC- -5'
25776 5' -55.2 NC_005337.1 + 65667 0.66 0.925496
Target:  5'- uCGaGGUGGUgccCAGCGGCga-GACCCuCGa -3'
miRNA:   3'- -GCgCCACCA---GUCGUUGaagUUGGG-GC- -5'
25776 5' -55.2 NC_005337.1 + 41832 0.66 0.925496
Target:  5'- gGCGGUGGUCgaaggagaugAGCAcguGCUcgagCAggugcgcgaGCCCCa -3'
miRNA:   3'- gCGCCACCAG----------UCGU---UGAa---GU---------UGGGGc -5'
25776 5' -55.2 NC_005337.1 + 101315 0.66 0.924404
Target:  5'- uGCGGaacuucaagaUCGGCAugUUCAACCUCa -3'
miRNA:   3'- gCGCCacc-------AGUCGUugAAGUUGGGGc -5'
25776 5' -55.2 NC_005337.1 + 128280 0.66 0.919938
Target:  5'- aCGCGGcGGUCuGCAACgcgcGCgCCUGg -3'
miRNA:   3'- -GCGCCaCCAGuCGUUGaaguUG-GGGC- -5'
25776 5' -55.2 NC_005337.1 + 5664 0.66 0.919938
Target:  5'- cCGCGGUaGUCGGCGuCUaUCAcGCCCgCGc -3'
miRNA:   3'- -GCGCCAcCAGUCGUuGA-AGU-UGGG-GC- -5'
25776 5' -55.2 NC_005337.1 + 131912 0.66 0.914137
Target:  5'- aCGCGGUcgaccGGUgCuGCGGCgcgCuGGCCCCGg -3'
miRNA:   3'- -GCGCCA-----CCA-GuCGUUGaa-G-UUGGGGC- -5'
25776 5' -55.2 NC_005337.1 + 58902 0.66 0.908095
Target:  5'- uCGUGGUGGcgCGGCAG----GACUCCGg -3'
miRNA:   3'- -GCGCCACCa-GUCGUUgaagUUGGGGC- -5'
25776 5' -55.2 NC_005337.1 + 85519 0.66 0.904353
Target:  5'- cCGCGGUGGUCAccgucgucuGgAugUUgAgcgcggcggugagaaGCCCCGg -3'
miRNA:   3'- -GCGCCACCAGU---------CgUugAAgU---------------UGGGGC- -5'
25776 5' -55.2 NC_005337.1 + 56269 0.66 0.901811
Target:  5'- aCGCGGUGGagUC-GCuGCUgucCAACCUCa -3'
miRNA:   3'- -GCGCCACC--AGuCGuUGAa--GUUGGGGc -5'
25776 5' -55.2 NC_005337.1 + 130101 0.66 0.901811
Target:  5'- gGcCGG-GGUCAGCGACgcaUCAcgGCUCUGu -3'
miRNA:   3'- gC-GCCaCCAGUCGUUGa--AGU--UGGGGC- -5'
25776 5' -55.2 NC_005337.1 + 10249 0.66 0.901811
Target:  5'- uGCaGGUGGcCAGCcACaUCAGCagcuCCCGg -3'
miRNA:   3'- gCG-CCACCaGUCGuUGaAGUUG----GGGC- -5'
25776 5' -55.2 NC_005337.1 + 97126 0.67 0.888536
Target:  5'- gGCGGUGG-CGG-AGCUgcgCGugCCCu -3'
miRNA:   3'- gCGCCACCaGUCgUUGAa--GUugGGGc -5'
25776 5' -55.2 NC_005337.1 + 35445 0.67 0.888536
Target:  5'- gCGCGGUGGgc-GCGACcgCGACCguCCa -3'
miRNA:   3'- -GCGCCACCaguCGUUGaaGUUGG--GGc -5'
25776 5' -55.2 NC_005337.1 + 46870 0.67 0.887848
Target:  5'- --aGGUGaagucguGUCuguGCAGCUUCcACCCCGa -3'
miRNA:   3'- gcgCCAC-------CAGu--CGUUGAAGuUGGGGC- -5'
25776 5' -55.2 NC_005337.1 + 10741 0.67 0.88155
Target:  5'- gGCGGUGGgacguGC-AC-UCGACCUCGa -3'
miRNA:   3'- gCGCCACCagu--CGuUGaAGUUGGGGC- -5'
25776 5' -55.2 NC_005337.1 + 122712 0.67 0.874339
Target:  5'- gGUGGUGGUCcGCGuGCUgucgcaCGugCCCGc -3'
miRNA:   3'- gCGCCACCAGuCGU-UGAa-----GUugGGGC- -5'
25776 5' -55.2 NC_005337.1 + 49362 0.67 0.874339
Target:  5'- uGCGGcGcGUgCGGCGGCUacuguUCGACCUCGu -3'
miRNA:   3'- gCGCCaC-CA-GUCGUUGA-----AGUUGGGGC- -5'
25776 5' -55.2 NC_005337.1 + 47269 0.67 0.866907
Target:  5'- aCGCGGacaugaccaaGGUCAGCGACaacuucUUCAGgUCCGa -3'
miRNA:   3'- -GCGCCa---------CCAGUCGUUG------AAGUUgGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.