miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25776 5' -55.2 NC_005337.1 + 5664 0.66 0.919938
Target:  5'- cCGCGGUaGUCGGCGuCUaUCAcGCCCgCGc -3'
miRNA:   3'- -GCGCCAcCAGUCGUuGA-AGU-UGGG-GC- -5'
25776 5' -55.2 NC_005337.1 + 6220 0.75 0.43425
Target:  5'- uGUGGUGGUgCAGCAGCgugu-CCCCGc -3'
miRNA:   3'- gCGCCACCA-GUCGUUGaaguuGGGGC- -5'
25776 5' -55.2 NC_005337.1 + 6795 0.72 0.611124
Target:  5'- cCGCGGUGGUguaCGGaGGCccCGGCCCCGa -3'
miRNA:   3'- -GCGCCACCA---GUCgUUGaaGUUGGGGC- -5'
25776 5' -55.2 NC_005337.1 + 6864 0.68 0.843342
Target:  5'- uCGCcaGGUGGUgCAGCAGCgu--GCgCCCGu -3'
miRNA:   3'- -GCG--CCACCA-GUCGUUGaaguUG-GGGC- -5'
25776 5' -55.2 NC_005337.1 + 7104 0.7 0.733713
Target:  5'- aGCGGUGG-CAGCGACgcagUCGAagUCUCa -3'
miRNA:   3'- gCGCCACCaGUCGUUGa---AGUU--GGGGc -5'
25776 5' -55.2 NC_005337.1 + 10249 0.66 0.901811
Target:  5'- uGCaGGUGGcCAGCcACaUCAGCagcuCCCGg -3'
miRNA:   3'- gCG-CCACCaGUCGuUGaAGUUG----GGGC- -5'
25776 5' -55.2 NC_005337.1 + 10741 0.67 0.88155
Target:  5'- gGCGGUGGgacguGC-AC-UCGACCUCGa -3'
miRNA:   3'- gCGCCACCagu--CGuUGaAGUUGGGGC- -5'
25776 5' -55.2 NC_005337.1 + 12709 0.7 0.732722
Target:  5'- uGCGGUGcUCGGCGAaggcgacguacgcCUcCAGCCCCa -3'
miRNA:   3'- gCGCCACcAGUCGUU-------------GAaGUUGGGGc -5'
25776 5' -55.2 NC_005337.1 + 18684 0.69 0.781887
Target:  5'- gGcCGGUcGGUCggagacAGCAGCUcgGGCCCCGg -3'
miRNA:   3'- gC-GCCA-CCAG------UCGUUGAagUUGGGGC- -5'
25776 5' -55.2 NC_005337.1 + 23102 1.08 0.003518
Target:  5'- gCGCGGUGGUCAGCAACUUCAACCCCGc -3'
miRNA:   3'- -GCGCCACCAGUCGUUGAAGUUGGGGC- -5'
25776 5' -55.2 NC_005337.1 + 29000 0.74 0.519763
Target:  5'- gGCGGccgcccagGGUCAGCcACggCGGCCCCa -3'
miRNA:   3'- gCGCCa-------CCAGUCGuUGaaGUUGGGGc -5'
25776 5' -55.2 NC_005337.1 + 30823 0.68 0.818019
Target:  5'- aGCGGUGGU-GGCAGCgcgUCGAgaCCa -3'
miRNA:   3'- gCGCCACCAgUCGUUGa--AGUUggGGc -5'
25776 5' -55.2 NC_005337.1 + 31909 0.75 0.443358
Target:  5'- gCGCGGUGGcCAGguGCg-CGGCCUCGg -3'
miRNA:   3'- -GCGCCACCaGUCguUGaaGUUGGGGC- -5'
25776 5' -55.2 NC_005337.1 + 32610 0.7 0.713747
Target:  5'- aGUGGagcGGUCGGUaguaGACUUCGGCCuuGg -3'
miRNA:   3'- gCGCCa--CCAGUCG----UUGAAGUUGGggC- -5'
25776 5' -55.2 NC_005337.1 + 35167 0.73 0.580273
Target:  5'- gGCGGagUGGUCGGCGACggcgUCGuCCgCCGu -3'
miRNA:   3'- gCGCC--ACCAGUCGUUGa---AGUuGG-GGC- -5'
25776 5' -55.2 NC_005337.1 + 35445 0.67 0.888536
Target:  5'- gCGCGGUGGgc-GCGACcgCGACCguCCa -3'
miRNA:   3'- -GCGCCACCaguCGUUGaaGUUGG--GGc -5'
25776 5' -55.2 NC_005337.1 + 36673 0.69 0.762963
Target:  5'- gGCGaUGGcCAGCGACUUCAGCa-CGg -3'
miRNA:   3'- gCGCcACCaGUCGUUGAAGUUGggGC- -5'
25776 5' -55.2 NC_005337.1 + 41832 0.66 0.925496
Target:  5'- gGCGGUGGUCgaaggagaugAGCAcguGCUcgagCAggugcgcgaGCCCCa -3'
miRNA:   3'- gCGCCACCAG----------UCGU---UGAa---GU---------UGGGGc -5'
25776 5' -55.2 NC_005337.1 + 42635 0.72 0.62145
Target:  5'- cCGCGGUGGUCGaCGGCU---GCUCCGu -3'
miRNA:   3'- -GCGCCACCAGUcGUUGAaguUGGGGC- -5'
25776 5' -55.2 NC_005337.1 + 45231 0.71 0.703654
Target:  5'- -aUGGUGGUCAGCAGCgcgcgCAugCgCGu -3'
miRNA:   3'- gcGCCACCAGUCGUUGaa---GUugGgGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.