miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25776 5' -55.2 NC_005337.1 + 23102 1.08 0.003518
Target:  5'- gCGCGGUGGUCAGCAACUUCAACCCCGc -3'
miRNA:   3'- -GCGCCACCAGUCGUUGAAGUUGGGGC- -5'
25776 5' -55.2 NC_005337.1 + 122712 0.67 0.874339
Target:  5'- gGUGGUGGUCcGCGuGCUgucgcaCGugCCCGc -3'
miRNA:   3'- gCGCCACCAGuCGU-UGAa-----GUugGGGC- -5'
25776 5' -55.2 NC_005337.1 + 46870 0.67 0.887848
Target:  5'- --aGGUGaagucguGUCuguGCAGCUUCcACCCCGa -3'
miRNA:   3'- gcgCCAC-------CAGu--CGUUGAAGuUGGGGC- -5'
25776 5' -55.2 NC_005337.1 + 65667 0.66 0.925496
Target:  5'- uCGaGGUGGUgccCAGCGGCga-GACCCuCGa -3'
miRNA:   3'- -GCgCCACCA---GUCGUUGaagUUGGG-GC- -5'
25776 5' -55.2 NC_005337.1 + 93800 0.71 0.652445
Target:  5'- --aGGUGcGUCAGCAGCUgcgCAGCUgCGg -3'
miRNA:   3'- gcgCCAC-CAGUCGUUGAa--GUUGGgGC- -5'
25776 5' -55.2 NC_005337.1 + 52056 0.71 0.703654
Target:  5'- uGCGGgagcUGGuUCGGCu-CUUCGACCgCCGg -3'
miRNA:   3'- gCGCC----ACC-AGUCGuuGAAGUUGG-GGC- -5'
25776 5' -55.2 NC_005337.1 + 12709 0.7 0.732722
Target:  5'- uGCGGUGcUCGGCGAaggcgacguacgcCUcCAGCCCCa -3'
miRNA:   3'- gCGCCACcAGUCGUU-------------GAaGUUGGGGc -5'
25776 5' -55.2 NC_005337.1 + 36673 0.69 0.762963
Target:  5'- gGCGaUGGcCAGCGACUUCAGCa-CGg -3'
miRNA:   3'- gCGCcACCaGUCGUUGAAGUUGggGC- -5'
25776 5' -55.2 NC_005337.1 + 30823 0.68 0.818019
Target:  5'- aGCGGUGGU-GGCAGCgcgUCGAgaCCa -3'
miRNA:   3'- gCGCCACCAgUCGUUGa--AGUUggGGc -5'
25776 5' -55.2 NC_005337.1 + 46514 0.68 0.851402
Target:  5'- cCGCGGUGuccGUCAgGCAccccGCagUGGCCCCGg -3'
miRNA:   3'- -GCGCCAC---CAGU-CGU----UGaaGUUGGGGC- -5'
25776 5' -55.2 NC_005337.1 + 6864 0.68 0.843342
Target:  5'- uCGCcaGGUGGUgCAGCAGCgu--GCgCCCGu -3'
miRNA:   3'- -GCG--CCACCA-GUCGUUGaaguUG-GGGC- -5'
25776 5' -55.2 NC_005337.1 + 68918 0.69 0.781887
Target:  5'- gCGCGuGUGcGUguGCGGCaUCGACCCg- -3'
miRNA:   3'- -GCGC-CAC-CAguCGUUGaAGUUGGGgc -5'
25776 5' -55.2 NC_005337.1 + 56701 0.74 0.480823
Target:  5'- gGCaGGUGGUCAGCGGCUcCGugCUCc -3'
miRNA:   3'- gCG-CCACCAGUCGUUGAaGUugGGGc -5'
25776 5' -55.2 NC_005337.1 + 67929 0.68 0.843342
Target:  5'- cCGCGGUGGUCgcgcuccacgAGCAcguguCgcCAGCCCgCGa -3'
miRNA:   3'- -GCGCCACCAG----------UCGUu----GaaGUUGGG-GC- -5'
25776 5' -55.2 NC_005337.1 + 78980 0.73 0.549761
Target:  5'- uGCGGUGcGUgGcGCGGCUguaGGCCCCGg -3'
miRNA:   3'- gCGCCAC-CAgU-CGUUGAag-UUGGGGC- -5'
25776 5' -55.2 NC_005337.1 + 97077 0.69 0.762963
Target:  5'- gCGCGGUGGUCuGCGugccCAACCgCa -3'
miRNA:   3'- -GCGCCACCAGuCGUugaaGUUGGgGc -5'
25776 5' -55.2 NC_005337.1 + 91220 0.68 0.843342
Target:  5'- cCGcCGGUGGUCAGCGcguccAUguggUCGGCCaaGg -3'
miRNA:   3'- -GC-GCCACCAGUCGU-----UGa---AGUUGGggC- -5'
25776 5' -55.2 NC_005337.1 + 49362 0.67 0.874339
Target:  5'- uGCGGcGcGUgCGGCGGCUacuguUCGACCUCGu -3'
miRNA:   3'- gCGCCaC-CA-GUCGUUGA-----AGUUGGGGC- -5'
25776 5' -55.2 NC_005337.1 + 42635 0.72 0.62145
Target:  5'- cCGCGGUGGUCGaCGGCU---GCUCCGu -3'
miRNA:   3'- -GCGCCACCAGUcGUUGAaguUGGGGC- -5'
25776 5' -55.2 NC_005337.1 + 68617 0.71 0.703654
Target:  5'- uCGCGGUGGggugguucggCGcGCAGCUgagcgCAcuagGCCCCGa -3'
miRNA:   3'- -GCGCCACCa---------GU-CGUUGAa----GU----UGGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.