miRNA display CGI


Results 21 - 40 of 429 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25783 3' -55.2 NC_005337.1 + 114597 0.66 0.923579
Target:  5'- gCCACGCGgcCGCugGaCAUAgGGUUc-- -3'
miRNA:   3'- gGGUGCGC--GCGugC-GUGUgCCAAaug -5'
25783 3' -55.2 NC_005337.1 + 60105 0.66 0.923579
Target:  5'- gCCCGaGCGCGCcuccCGCAgCACGGc---- -3'
miRNA:   3'- -GGGUgCGCGCGu---GCGU-GUGCCaaaug -5'
25783 3' -55.2 NC_005337.1 + 82121 0.66 0.923579
Target:  5'- gCCGCGCugGCGCAUgaGCGCGCGa----- -3'
miRNA:   3'- gGGUGCG--CGCGUG--CGUGUGCcaaaug -5'
25783 3' -55.2 NC_005337.1 + 83879 0.66 0.923579
Target:  5'- aCCgACGCGCgGCGCGCcccCGCGccagGCg -3'
miRNA:   3'- -GGgUGCGCG-CGUGCGu--GUGCcaaaUG- -5'
25783 3' -55.2 NC_005337.1 + 89769 0.66 0.923579
Target:  5'- gCCGCGaGCGCGaguUGCGCGuCGGUgacGCg -3'
miRNA:   3'- gGGUGCgCGCGU---GCGUGU-GCCAaa-UG- -5'
25783 3' -55.2 NC_005337.1 + 123837 0.66 0.923579
Target:  5'- aCgACGCGCGCAcCGC-CGCGcag-GCg -3'
miRNA:   3'- gGgUGCGCGCGU-GCGuGUGCcaaaUG- -5'
25783 3' -55.2 NC_005337.1 + 133564 0.66 0.923579
Target:  5'- cCCCGCGgcCGCGgGCGUGCGCGcGa---- -3'
miRNA:   3'- -GGGUGC--GCGCgUGCGUGUGC-Caaaug -5'
25783 3' -55.2 NC_005337.1 + 14421 0.66 0.923579
Target:  5'- gCCGCGCGacgugccgcCGCugGCGC-CGGg---- -3'
miRNA:   3'- gGGUGCGC---------GCGugCGUGuGCCaaaug -5'
25783 3' -55.2 NC_005337.1 + 82625 0.66 0.923579
Target:  5'- aCgGCGgGCGCugGCGacCGCGGa---- -3'
miRNA:   3'- gGgUGCgCGCGugCGU--GUGCCaaaug -5'
25783 3' -55.2 NC_005337.1 + 73159 0.66 0.920232
Target:  5'- aUCCugGgGCGCGCcgugcgcaaguucucGUACACGGa---- -3'
miRNA:   3'- -GGGugCgCGCGUG---------------CGUGUGCCaaaug -5'
25783 3' -55.2 NC_005337.1 + 104233 0.66 0.917952
Target:  5'- aCCACGCGCaccaGCcagaaGgGCACGGUcgcgUACg -3'
miRNA:   3'- gGGUGCGCG----CGug---CgUGUGCCAa---AUG- -5'
25783 3' -55.2 NC_005337.1 + 104620 0.66 0.917952
Target:  5'- aCCGCGgGaGCACGCGCAucuCGGa---- -3'
miRNA:   3'- gGGUGCgCgCGUGCGUGU---GCCaaaug -5'
25783 3' -55.2 NC_005337.1 + 93741 0.66 0.917952
Target:  5'- aCCAcCGCGCGC-CGCG-GCGGc-UGCa -3'
miRNA:   3'- gGGU-GCGCGCGuGCGUgUGCCaaAUG- -5'
25783 3' -55.2 NC_005337.1 + 65697 0.66 0.917952
Target:  5'- uCCC-UGUugGUGCAcagcCGCACGCGGUgggGCg -3'
miRNA:   3'- -GGGuGCG--CGCGU----GCGUGUGCCAaa-UG- -5'
25783 3' -55.2 NC_005337.1 + 35114 0.66 0.917952
Target:  5'- gUCCGCGCG-GCGCGgACGCccagUGCg -3'
miRNA:   3'- -GGGUGCGCgCGUGCgUGUGccaaAUG- -5'
25783 3' -55.2 NC_005337.1 + 64369 0.66 0.917952
Target:  5'- gUCCAgCGCGCGCAggaGCACguugucggaGCGGcg-GCa -3'
miRNA:   3'- -GGGU-GCGCGCGUg--CGUG---------UGCCaaaUG- -5'
25783 3' -55.2 NC_005337.1 + 12084 0.66 0.917952
Target:  5'- gCCCgcggcgaugagGCGCGgGCACGCuuCGgGGUUg-- -3'
miRNA:   3'- -GGG-----------UGCGCgCGUGCGu-GUgCCAAaug -5'
25783 3' -55.2 NC_005337.1 + 33883 0.66 0.917952
Target:  5'- --aGCGCGCGCcCGCGCACucgaUGCa -3'
miRNA:   3'- gggUGCGCGCGuGCGUGUGccaaAUG- -5'
25783 3' -55.2 NC_005337.1 + 32332 0.66 0.917952
Target:  5'- gCCACGUGCGgGCGCAgCucguccaggACGGUc--- -3'
miRNA:   3'- gGGUGCGCGCgUGCGU-G---------UGCCAaaug -5'
25783 3' -55.2 NC_005337.1 + 92946 0.66 0.917952
Target:  5'- uUCUACaGCGUGCugGUGCGCGuGg--ACg -3'
miRNA:   3'- -GGGUG-CGCGCGugCGUGUGC-CaaaUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.