miRNA display CGI


Results 21 - 40 of 87 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25783 5' -55.1 NC_005337.1 + 32634 0.66 0.898702
Target:  5'- cGGccuUGGGguCGGGCaacaaaaacUUGUAUCCGAGCg -3'
miRNA:   3'- aCC---ACUUguGCCCG---------AACGUGGGCUUG- -5'
25783 5' -55.1 NC_005337.1 + 71076 0.66 0.898702
Target:  5'- uUGGUGcGGCGCuuGGGC-UGCuugACCgGAGCg -3'
miRNA:   3'- -ACCAC-UUGUG--CCCGaACG---UGGgCUUG- -5'
25783 5' -55.1 NC_005337.1 + 50373 0.66 0.894707
Target:  5'- cGGgcccGGGCACGGGCgccuggcgcggggGCGCgCCGcGCg -3'
miRNA:   3'- aCCa---CUUGUGCCCGaa-----------CGUG-GGCuUG- -5'
25783 5' -55.1 NC_005337.1 + 108975 0.66 0.891995
Target:  5'- cGGUcGACGCGcGGCccgcccgccgUGCGCgCGAACu -3'
miRNA:   3'- aCCAcUUGUGC-CCGa---------ACGUGgGCUUG- -5'
25783 5' -55.1 NC_005337.1 + 13800 0.66 0.891995
Target:  5'- ---cGGACACguGGGCgaUGC-CCCGGACg -3'
miRNA:   3'- accaCUUGUG--CCCGa-ACGuGGGCUUG- -5'
25783 5' -55.1 NC_005337.1 + 17926 0.66 0.889246
Target:  5'- ---aGGACGCGGGUcauggcccggcgcUGCGCCCGcAGCa -3'
miRNA:   3'- accaCUUGUGCCCGa------------ACGUGGGC-UUG- -5'
25783 5' -55.1 NC_005337.1 + 38424 0.66 0.885051
Target:  5'- cUGGUGGACGaccagGGGCgcgucaucaCGCCCGAGg -3'
miRNA:   3'- -ACCACUUGUg----CCCGaac------GUGGGCUUg -5'
25783 5' -55.1 NC_005337.1 + 64260 0.66 0.885051
Target:  5'- cGGcucugGGACcCGGGC--GCGCCgGAGCa -3'
miRNA:   3'- aCCa----CUUGuGCCCGaaCGUGGgCUUG- -5'
25783 5' -55.1 NC_005337.1 + 131890 0.66 0.885051
Target:  5'- --cUGGAgGCGGGCgcGCACgUGGACg -3'
miRNA:   3'- accACUUgUGCCCGaaCGUGgGCUUG- -5'
25783 5' -55.1 NC_005337.1 + 56458 0.66 0.884344
Target:  5'- cGGUGGcCgagaccaaggucuACGGGCgcgUGCugCCGuACg -3'
miRNA:   3'- aCCACUuG-------------UGCCCGa--ACGugGGCuUG- -5'
25783 5' -55.1 NC_005337.1 + 63983 0.67 0.877874
Target:  5'- aUGGUGAugugguGCGCGuGCUUGUGCCgCGGc- -3'
miRNA:   3'- -ACCACU------UGUGCcCGAACGUGG-GCUug -5'
25783 5' -55.1 NC_005337.1 + 48381 0.67 0.877874
Target:  5'- aUGGUGcccauGCuggaGGGCUccgUGUGCCCGAucGCg -3'
miRNA:   3'- -ACCACu----UGug--CCCGA---ACGUGGGCU--UG- -5'
25783 5' -55.1 NC_005337.1 + 112011 0.67 0.873458
Target:  5'- cUGGUGAcgcgggcguucagccACACccaguagcuGGGCUUGUcCCCGGGg -3'
miRNA:   3'- -ACCACU---------------UGUG---------CCCGAACGuGGGCUUg -5'
25783 5' -55.1 NC_005337.1 + 70775 0.67 0.870468
Target:  5'- cGGUGAGCACGGaGgacaGCGCCUucACg -3'
miRNA:   3'- aCCACUUGUGCC-Cgaa-CGUGGGcuUG- -5'
25783 5' -55.1 NC_005337.1 + 92406 0.67 0.870468
Target:  5'- cGGgGAcguGCugGGGCUcgcGCACCugcuCGAGCa -3'
miRNA:   3'- aCCaCU---UGugCCCGAa--CGUGG----GCUUG- -5'
25783 5' -55.1 NC_005337.1 + 104481 0.67 0.867443
Target:  5'- cGaGUucGCGCGGcGCUgcuacgcgcucgcGCACCCGGACg -3'
miRNA:   3'- aC-CAcuUGUGCC-CGAa------------CGUGGGCUUG- -5'
25783 5' -55.1 NC_005337.1 + 95631 0.67 0.86284
Target:  5'- -cGUGGGCGCGGGCccGCucgccauCuuGAACa -3'
miRNA:   3'- acCACUUGUGCCCGaaCGu------GggCUUG- -5'
25783 5' -55.1 NC_005337.1 + 89187 0.67 0.86284
Target:  5'- aGG-GggUGcCGGGCgcucGcCGCCCGAGCa -3'
miRNA:   3'- aCCaCuuGU-GCCCGaa--C-GUGGGCUUG- -5'
25783 5' -55.1 NC_005337.1 + 28627 0.67 0.86284
Target:  5'- aUGGUGAGCACGGuccggaGCacgaGCCCGAc- -3'
miRNA:   3'- -ACCACUUGUGCC------CGaacgUGGGCUug -5'
25783 5' -55.1 NC_005337.1 + 65767 0.67 0.854995
Target:  5'- ---cGAGCGCGGGC--GCACCCa--- -3'
miRNA:   3'- accaCUUGUGCCCGaaCGUGGGcuug -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.