miRNA display CGI


Results 1 - 20 of 170 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25789 3' -55.7 NC_005337.1 + 76661 0.66 0.901873
Target:  5'- gGAAGUUgAGCuGCucgggCUCCAcgaagcGCAGCa -3'
miRNA:   3'- gCUUCAGgUCGcCGua---GAGGU------CGUCG- -5'
25789 3' -55.7 NC_005337.1 + 127877 0.66 0.901873
Target:  5'- --cAGUCUGGUGGCGcgCggcgCCGGCgAGCg -3'
miRNA:   3'- gcuUCAGGUCGCCGUa-Ga---GGUCG-UCG- -5'
25789 3' -55.7 NC_005337.1 + 89420 0.66 0.901873
Target:  5'- ---uGUCCAGCaugGGCGUCacaguuagguUCCuguGCGGCu -3'
miRNA:   3'- gcuuCAGGUCG---CCGUAG----------AGGu--CGUCG- -5'
25789 3' -55.7 NC_005337.1 + 80565 0.66 0.901873
Target:  5'- aCGAGcuccguGUCCAgcaugcGCGGCAgCUUCAGC-GCg -3'
miRNA:   3'- -GCUU------CAGGU------CGCCGUaGAGGUCGuCG- -5'
25789 3' -55.7 NC_005337.1 + 10827 0.66 0.901873
Target:  5'- gCGGgcgGGUCUAGC-GCAUCUCUGuGCGGg -3'
miRNA:   3'- -GCU---UCAGGUCGcCGUAGAGGU-CGUCg -5'
25789 3' -55.7 NC_005337.1 + 19684 0.66 0.901873
Target:  5'- ---uGUCCAGCGGCcgCguggcguaCAGCgccGGCg -3'
miRNA:   3'- gcuuCAGGUCGCCGuaGag------GUCG---UCG- -5'
25789 3' -55.7 NC_005337.1 + 30353 0.66 0.901229
Target:  5'- uGAAGuucUCCAGCGGgAUCUCgAccugguacuucuuGCAGg -3'
miRNA:   3'- gCUUC---AGGUCGCCgUAGAGgU-------------CGUCg -5'
25789 3' -55.7 NC_005337.1 + 62782 0.66 0.899934
Target:  5'- gCGAAGUCgGGCaccgcguccggcguGGCGUCcagcgagaCCuGCGGCa -3'
miRNA:   3'- -GCUUCAGgUCG--------------CCGUAGa-------GGuCGUCG- -5'
25789 3' -55.7 NC_005337.1 + 70466 0.66 0.895326
Target:  5'- ---cGUCUGGCugaacaacuccuGGCG-CUUCAGCAGCg -3'
miRNA:   3'- gcuuCAGGUCG------------CCGUaGAGGUCGUCG- -5'
25789 3' -55.7 NC_005337.1 + 31089 0.66 0.895326
Target:  5'- gCGggGUUCAGCGaggccacgagcGCGUuCUCCA-CGGUg -3'
miRNA:   3'- -GCuuCAGGUCGC-----------CGUA-GAGGUcGUCG- -5'
25789 3' -55.7 NC_005337.1 + 8417 0.66 0.895326
Target:  5'- gGAuGUCCGcaccGCGGgGaUCgcaUCCGGCGGCg -3'
miRNA:   3'- gCUuCAGGU----CGCCgU-AG---AGGUCGUCG- -5'
25789 3' -55.7 NC_005337.1 + 84528 0.66 0.894658
Target:  5'- cCGAGGUCCccgaggacGCGGCggCUguggaaacgaacgCgCGGCAGCg -3'
miRNA:   3'- -GCUUCAGGu-------CGCCGuaGA-------------G-GUCGUCG- -5'
25789 3' -55.7 NC_005337.1 + 58483 0.66 0.888543
Target:  5'- uCGGccUCCAGCcg---CUCCAGCAGCu -3'
miRNA:   3'- -GCUucAGGUCGccguaGAGGUCGUCG- -5'
25789 3' -55.7 NC_005337.1 + 25757 0.66 0.888543
Target:  5'- gCGccGUCCAGCGuGCG-CUCCAGg--- -3'
miRNA:   3'- -GCuuCAGGUCGC-CGUaGAGGUCgucg -5'
25789 3' -55.7 NC_005337.1 + 90627 0.66 0.888543
Target:  5'- aCGAAGUCgGcGUGGC-UCUCCuuguugauGUAGUg -3'
miRNA:   3'- -GCUUCAGgU-CGCCGuAGAGGu-------CGUCG- -5'
25789 3' -55.7 NC_005337.1 + 3482 0.66 0.888543
Target:  5'- aGAAG-CgCAGCaGCcgCaCCGGCGGCg -3'
miRNA:   3'- gCUUCaG-GUCGcCGuaGaGGUCGUCG- -5'
25789 3' -55.7 NC_005337.1 + 86136 0.66 0.888543
Target:  5'- ---cGUCCAcGUacgaGGcCAUCUCCAGCguGGCg -3'
miRNA:   3'- gcuuCAGGU-CG----CC-GUAGAGGUCG--UCG- -5'
25789 3' -55.7 NC_005337.1 + 71619 0.66 0.888543
Target:  5'- aCGuGG-CCAuGcCGGCcaacGUCuUCCAGCAGCg -3'
miRNA:   3'- -GCuUCaGGU-C-GCCG----UAG-AGGUCGUCG- -5'
25789 3' -55.7 NC_005337.1 + 27538 0.66 0.887851
Target:  5'- aGGAcacGUUCAGaaaguCGGacaugaaCGUCUCCGGCAGCg -3'
miRNA:   3'- gCUU---CAGGUC-----GCC-------GUAGAGGUCGUCG- -5'
25789 3' -55.7 NC_005337.1 + 77892 0.66 0.884361
Target:  5'- uGggGUUCAccuuguaccccgcgcGCGcCAUCUUCAGCAGg -3'
miRNA:   3'- gCuuCAGGU---------------CGCcGUAGAGGUCGUCg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.