miRNA display CGI


Results 1 - 20 of 170 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25789 3' -55.7 NC_005337.1 + 515 0.68 0.817693
Target:  5'- aGAGcUCCucGCGGCGcaggcgCUCCAGCuGCc -3'
miRNA:   3'- gCUUcAGGu-CGCCGUa-----GAGGUCGuCG- -5'
25789 3' -55.7 NC_005337.1 + 515 0.68 0.817693
Target:  5'- aGAGcUCCucGCGGCGcaggcgCUCCAGCuGCc -3'
miRNA:   3'- gCUUcAGGu-CGCCGUa-----GAGGUCGuCG- -5'
25789 3' -55.7 NC_005337.1 + 1046 0.66 0.874284
Target:  5'- gGAGG-CgGGCGGCGggaggCCGGCGGg -3'
miRNA:   3'- gCUUCaGgUCGCCGUaga--GGUCGUCg -5'
25789 3' -55.7 NC_005337.1 + 1046 0.66 0.874284
Target:  5'- gGAGG-CgGGCGGCGggaggCCGGCGGg -3'
miRNA:   3'- gCUUCaGgUCGCCGUaga--GGUCGUCg -5'
25789 3' -55.7 NC_005337.1 + 1284 0.69 0.722968
Target:  5'- gCGGAGgcgggUCGGCgGGCAgguuguccaUCCGGCGGCg -3'
miRNA:   3'- -GCUUCa----GGUCG-CCGUag-------AGGUCGUCG- -5'
25789 3' -55.7 NC_005337.1 + 1326 0.67 0.85124
Target:  5'- gGAGGUCCAGCG-CG-CUgCAG-AGCg -3'
miRNA:   3'- gCUUCAGGUCGCcGUaGAgGUCgUCG- -5'
25789 3' -55.7 NC_005337.1 + 1809 0.71 0.640935
Target:  5'- uGGAGUgCAGCGGCGUgUUCCcgaacacguuGGUGGCg -3'
miRNA:   3'- gCUUCAgGUCGCCGUA-GAGG----------UCGUCG- -5'
25789 3' -55.7 NC_005337.1 + 1985 0.66 0.866817
Target:  5'- aCGAGcUCCAGCucGCGUCggacgacCgCAGCAGCa -3'
miRNA:   3'- -GCUUcAGGUCGc-CGUAGa------G-GUCGUCG- -5'
25789 3' -55.7 NC_005337.1 + 2303 0.73 0.508235
Target:  5'- gCGggGUCgggagcgucggUGGCGGCAUUuaUCCAGCGGg -3'
miRNA:   3'- -GCuuCAG-----------GUCGCCGUAG--AGGUCGUCg -5'
25789 3' -55.7 NC_005337.1 + 2471 0.72 0.568583
Target:  5'- gCGggGUCCucGGCGGCuauguUCggguacgcgCgCAGCAGCg -3'
miRNA:   3'- -GCuuCAGG--UCGCCGu----AGa--------G-GUCGUCG- -5'
25789 3' -55.7 NC_005337.1 + 2733 0.71 0.655452
Target:  5'- gGAAGUUCGcGCaccccGGCAUCUCguagaucuugagguaCAGCAGCg -3'
miRNA:   3'- gCUUCAGGU-CG-----CCGUAGAG---------------GUCGUCG- -5'
25789 3' -55.7 NC_005337.1 + 2855 0.69 0.762357
Target:  5'- aCGGAGUCC-GCGGagccgCgcgCCAGCGGg -3'
miRNA:   3'- -GCUUCAGGuCGCCgua--Ga--GGUCGUCg -5'
25789 3' -55.7 NC_005337.1 + 2884 0.72 0.562451
Target:  5'- gCGuGG-CCGGCGGCGUCcggcugcagaccacgUCCAGgAGCg -3'
miRNA:   3'- -GCuUCaGGUCGCCGUAG---------------AGGUCgUCG- -5'
25789 3' -55.7 NC_005337.1 + 3000 0.69 0.752664
Target:  5'- gCGA---CUGGCGGaCGggCUCCGGCAGCg -3'
miRNA:   3'- -GCUucaGGUCGCC-GUa-GAGGUCGUCG- -5'
25789 3' -55.7 NC_005337.1 + 3085 0.69 0.742862
Target:  5'- aCGGAGgggcgcuggcccUCCuccGCGcGCAUCagCAGCAGCa -3'
miRNA:   3'- -GCUUC------------AGGu--CGC-CGUAGagGUCGUCG- -5'
25789 3' -55.7 NC_005337.1 + 3482 0.66 0.888543
Target:  5'- aGAAG-CgCAGCaGCcgCaCCGGCGGCg -3'
miRNA:   3'- gCUUCaG-GUCGcCGuaGaGGUCGUCG- -5'
25789 3' -55.7 NC_005337.1 + 3931 0.73 0.508235
Target:  5'- -cAGGUgUAGCGGCGUCgagcugCAGCAGCg -3'
miRNA:   3'- gcUUCAgGUCGCCGUAGag----GUCGUCG- -5'
25789 3' -55.7 NC_005337.1 + 4043 0.66 0.866817
Target:  5'- ---cGUgCAGCGGCGUCuugUCgAGCGGg -3'
miRNA:   3'- gcuuCAgGUCGCCGUAG---AGgUCGUCg -5'
25789 3' -55.7 NC_005337.1 + 4079 0.72 0.589132
Target:  5'- uGAcGUCC-GCGccCAUCUUCAGCAGCg -3'
miRNA:   3'- gCUuCAGGuCGCc-GUAGAGGUCGUCG- -5'
25789 3' -55.7 NC_005337.1 + 4211 0.68 0.781377
Target:  5'- ----uUCCAGCGGCGUCggugCaaaAGguGCg -3'
miRNA:   3'- gcuucAGGUCGCCGUAGa---Gg--UCguCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.