miRNA display CGI


Results 1 - 20 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25789 5' -60 NC_005337.1 + 13433 0.66 0.724939
Target:  5'- aGCGC-CAGCAcCGgGGCCUCUGGGu- -3'
miRNA:   3'- -UGCGcGUCGUcGCaCUGGAGGCCUgu -5'
25789 5' -60 NC_005337.1 + 74936 0.66 0.724938
Target:  5'- cGCGCGCGGCcGCGcgGAUgcggugcuggggCUCCGcGGCu -3'
miRNA:   3'- -UGCGCGUCGuCGCa-CUG------------GAGGC-CUGu -5'
25789 5' -60 NC_005337.1 + 16035 0.66 0.724938
Target:  5'- cACGCGCuGCGGCGccuGCCgccgCgCGGGCc -3'
miRNA:   3'- -UGCGCGuCGUCGCac-UGGa---G-GCCUGu -5'
25789 5' -60 NC_005337.1 + 65004 0.66 0.719081
Target:  5'- cGCGCGCGGCGGgGUGgaaGCCcaccaccagcgucaCCGGcACGu -3'
miRNA:   3'- -UGCGCGUCGUCgCAC---UGGa-------------GGCC-UGU- -5'
25789 5' -60 NC_005337.1 + 125746 0.66 0.715161
Target:  5'- -gGCGgAGCGcGCGUGACCgagaaGGACc -3'
miRNA:   3'- ugCGCgUCGU-CGCACUGGagg--CCUGu -5'
25789 5' -60 NC_005337.1 + 63366 0.66 0.715161
Target:  5'- -aGCuGCAGaaccaGGaCGUGGCUUCCGGAg- -3'
miRNA:   3'- ugCG-CGUCg----UC-GCACUGGAGGCCUgu -5'
25789 5' -60 NC_005337.1 + 38599 0.66 0.715161
Target:  5'- gGCGCGagcGCAGCGUGGgCgugCUGGGgAa -3'
miRNA:   3'- -UGCGCgu-CGUCGCACUgGa--GGCCUgU- -5'
25789 5' -60 NC_005337.1 + 64250 0.66 0.715161
Target:  5'- gGCGCuGCGGCGGCucuggGACCcgggcgcgCCGGAgCAa -3'
miRNA:   3'- -UGCG-CGUCGUCGca---CUGGa-------GGCCU-GU- -5'
25789 5' -60 NC_005337.1 + 113159 0.66 0.715161
Target:  5'- uCGCGguGCGcuGCGUGGCggCCGG-CGu -3'
miRNA:   3'- uGCGCguCGU--CGCACUGgaGGCCuGU- -5'
25789 5' -60 NC_005337.1 + 57415 0.66 0.715161
Target:  5'- aGCGCGCAcGCGGCcuacGUGgacuacGCgCUCCGGcGCAc -3'
miRNA:   3'- -UGCGCGU-CGUCG----CAC------UG-GAGGCC-UGU- -5'
25789 5' -60 NC_005337.1 + 132945 0.66 0.71418
Target:  5'- gACcCGCucuGCAGCGcgcugGACCUCCugcgccgccggauGGACAa -3'
miRNA:   3'- -UGcGCGu--CGUCGCa----CUGGAGG-------------CCUGU- -5'
25789 5' -60 NC_005337.1 + 10245 0.66 0.705316
Target:  5'- gGCGCGCGGCcuucGCGgggcGCCUCCaucGGCGg -3'
miRNA:   3'- -UGCGCGUCGu---CGCac--UGGAGGc--CUGU- -5'
25789 5' -60 NC_005337.1 + 24836 0.66 0.705316
Target:  5'- cCGUGCucgAGCGGCGcGugCUCgaGGACGu -3'
miRNA:   3'- uGCGCG---UCGUCGCaCugGAGg-CCUGU- -5'
25789 5' -60 NC_005337.1 + 38680 0.66 0.705316
Target:  5'- gGCGCGCuGCuGCacccGGCCgaccCCGGACu -3'
miRNA:   3'- -UGCGCGuCGuCGca--CUGGa---GGCCUGu -5'
25789 5' -60 NC_005337.1 + 109469 0.66 0.705316
Target:  5'- uGCGUGC-GC-GCGUGggcgcGCUUCCGGAUc -3'
miRNA:   3'- -UGCGCGuCGuCGCAC-----UGGAGGCCUGu -5'
25789 5' -60 NC_005337.1 + 131341 0.66 0.705316
Target:  5'- uGCGCGCcguGC-GCGUcGGCaCUCCGG-CGa -3'
miRNA:   3'- -UGCGCGu--CGuCGCA-CUG-GAGGCCuGU- -5'
25789 5' -60 NC_005337.1 + 63921 0.66 0.705315
Target:  5'- cACGUGCGGCGGCGc-ACCgCCGuGCGg -3'
miRNA:   3'- -UGCGCGUCGUCGCacUGGaGGCcUGU- -5'
25789 5' -60 NC_005337.1 + 123841 0.66 0.704328
Target:  5'- cGCGCGCAccgccgcGCAgGCGU--CCUCCuGGGCGc -3'
miRNA:   3'- -UGCGCGU-------CGU-CGCAcuGGAGG-CCUGU- -5'
25789 5' -60 NC_005337.1 + 67888 0.66 0.703339
Target:  5'- -gGCGCAGC-GCGUGcUCgaagcgguggagCCGGACGg -3'
miRNA:   3'- ugCGCGUCGuCGCACuGGa-----------GGCCUGU- -5'
25789 5' -60 NC_005337.1 + 1891 0.66 0.69541
Target:  5'- uAUGCGCAcuCGGCG--GCCUCCGGGa- -3'
miRNA:   3'- -UGCGCGUc-GUCGCacUGGAGGCCUgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.