miRNA display CGI


Results 1 - 20 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25789 5' -60 NC_005337.1 + 27131 1.07 0.001355
Target:  5'- cACGCGCAGCAGCGUGACCUCCGGACAc -3'
miRNA:   3'- -UGCGCGUCGUCGCACUGGAGGCCUGU- -5'
25789 5' -60 NC_005337.1 + 42784 0.84 0.059585
Target:  5'- uCGgGCGGCAGCGUGACCUUCGuGGCGg -3'
miRNA:   3'- uGCgCGUCGUCGCACUGGAGGC-CUGU- -5'
25789 5' -60 NC_005337.1 + 95715 0.83 0.071737
Target:  5'- cGCGCGCAGCAGC--GACC-CCGGACGg -3'
miRNA:   3'- -UGCGCGUCGUCGcaCUGGaGGCCUGU- -5'
25789 5' -60 NC_005337.1 + 121216 0.81 0.093293
Target:  5'- cGCGCGCAGCAGCGacacgGACUgCUGGGCAu -3'
miRNA:   3'- -UGCGCGUCGUCGCa----CUGGaGGCCUGU- -5'
25789 5' -60 NC_005337.1 + 12501 0.8 0.111899
Target:  5'- gGCGUccaGCAGCAgccGCGUGACCUCCGGGu- -3'
miRNA:   3'- -UGCG---CGUCGU---CGCACUGGAGGCCUgu -5'
25789 5' -60 NC_005337.1 + 122609 0.77 0.163962
Target:  5'- cGCGgGCGGCGGCGUGuuCUUCuCGGACGc -3'
miRNA:   3'- -UGCgCGUCGUCGCACu-GGAG-GCCUGU- -5'
25789 5' -60 NC_005337.1 + 39662 0.77 0.168115
Target:  5'- cGCGUGgGGC-GCGUGGCC-CCGGGCAc -3'
miRNA:   3'- -UGCGCgUCGuCGCACUGGaGGCCUGU- -5'
25789 5' -60 NC_005337.1 + 36511 0.75 0.225716
Target:  5'- uCGCGCAGCGcgcGCGUGAUCUCgGGGg- -3'
miRNA:   3'- uGCGCGUCGU---CGCACUGGAGgCCUgu -5'
25789 5' -60 NC_005337.1 + 2124 0.75 0.225716
Target:  5'- cGCGUGCAGCGGCGUucugucaacGACgCcCCGGGCGu -3'
miRNA:   3'- -UGCGCGUCGUCGCA---------CUG-GaGGCCUGU- -5'
25789 5' -60 NC_005337.1 + 6119 0.75 0.231206
Target:  5'- cACGUGCAGCGGCGUG-CgUCCGaGCGc -3'
miRNA:   3'- -UGCGCGUCGUCGCACuGgAGGCcUGU- -5'
25789 5' -60 NC_005337.1 + 80525 0.74 0.260356
Target:  5'- gACGCGCAGCuGC---AUCUCCGGGCGg -3'
miRNA:   3'- -UGCGCGUCGuCGcacUGGAGGCCUGU- -5'
25789 5' -60 NC_005337.1 + 22661 0.74 0.279245
Target:  5'- gACGCGCGGCuGCGggagcGCUUCgCGGACAu -3'
miRNA:   3'- -UGCGCGUCGuCGCac---UGGAG-GCCUGU- -5'
25789 5' -60 NC_005337.1 + 90919 0.74 0.285779
Target:  5'- cACGCGCAGCGGCGU--CUUCCcGGCGg -3'
miRNA:   3'- -UGCGCGUCGUCGCAcuGGAGGcCUGU- -5'
25789 5' -60 NC_005337.1 + 9026 0.74 0.292434
Target:  5'- uACGUGCAGUGGCGUGuACCcguaCGGACc -3'
miRNA:   3'- -UGCGCGUCGUCGCAC-UGGag--GCCUGu -5'
25789 5' -60 NC_005337.1 + 70887 0.73 0.299209
Target:  5'- uCGC-CAGCAGCGgcGCCUCCGGAa- -3'
miRNA:   3'- uGCGcGUCGUCGCacUGGAGGCCUgu -5'
25789 5' -60 NC_005337.1 + 41959 0.73 0.306104
Target:  5'- uGCGCGCgAGCAGCuugucguUGACCgUCCGGAgGa -3'
miRNA:   3'- -UGCGCG-UCGUCGc------ACUGG-AGGCCUgU- -5'
25789 5' -60 NC_005337.1 + 90648 0.73 0.313121
Target:  5'- uCGCGCGGCGGCGcUGAUCU-CGGAg- -3'
miRNA:   3'- uGCGCGUCGUCGC-ACUGGAgGCCUgu -5'
25789 5' -60 NC_005337.1 + 84563 0.73 0.313121
Target:  5'- aACGCGCGGCAgcGCGUGACCgcgagGGugGa -3'
miRNA:   3'- -UGCGCGUCGU--CGCACUGGagg--CCugU- -5'
25789 5' -60 NC_005337.1 + 29564 0.73 0.320259
Target:  5'- cCGcCGCGGCGGCGgcccucguUGGCCUgCCGGAUg -3'
miRNA:   3'- uGC-GCGUCGUCGC--------ACUGGA-GGCCUGu -5'
25789 5' -60 NC_005337.1 + 6424 0.73 0.320259
Target:  5'- cACGCaCAGCAGCGcGGCCUCCGa--- -3'
miRNA:   3'- -UGCGcGUCGUCGCaCUGGAGGCcugu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.