miRNA display CGI


Results 21 - 40 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25789 5' -60 NC_005337.1 + 1891 0.66 0.69541
Target:  5'- uAUGCGCAcuCGGCG--GCCUCCGGGa- -3'
miRNA:   3'- -UGCGCGUc-GUCGCacUGGAGGCCUgu -5'
25789 5' -60 NC_005337.1 + 34013 0.66 0.69541
Target:  5'- cGCGCGCGGUAG-GUG-CUcCCGGuCAu -3'
miRNA:   3'- -UGCGCGUCGUCgCACuGGaGGCCuGU- -5'
25789 5' -60 NC_005337.1 + 131772 0.66 0.69541
Target:  5'- -gGUGCGGCAGCugcUGAgCCUCggcgCGGACGu -3'
miRNA:   3'- ugCGCGUCGUCGc--ACU-GGAG----GCCUGU- -5'
25789 5' -60 NC_005337.1 + 84214 0.66 0.695409
Target:  5'- cACGgGCuGCugugcgGGCGcGGCCUgCGGGCAc -3'
miRNA:   3'- -UGCgCGuCG------UCGCaCUGGAgGCCUGU- -5'
25789 5' -60 NC_005337.1 + 34379 0.66 0.695409
Target:  5'- cCGcCGCGGCgagccagaggAGCGUGGCggugCUCCaGGGCAg -3'
miRNA:   3'- uGC-GCGUCG----------UCGCACUG----GAGG-CCUGU- -5'
25789 5' -60 NC_005337.1 + 43364 0.66 0.694416
Target:  5'- gACGcCGCuGC-GCGUGugCUucuacccCCGGGCGg -3'
miRNA:   3'- -UGC-GCGuCGuCGCACugGA-------GGCCUGU- -5'
25789 5' -60 NC_005337.1 + 25985 0.66 0.68944
Target:  5'- -aGCGCAGCAGCaUGgggaugaugcccuucGCCUCgCGGuCGa -3'
miRNA:   3'- ugCGCGUCGUCGcAC---------------UGGAG-GCCuGU- -5'
25789 5' -60 NC_005337.1 + 40679 0.66 0.685452
Target:  5'- -gGCGCGGCgacGGCGguaucucuuCCUCCGGAa- -3'
miRNA:   3'- ugCGCGUCG---UCGCacu------GGAGGCCUgu -5'
25789 5' -60 NC_005337.1 + 10439 0.66 0.684453
Target:  5'- cUGCGCGGCGgugcgcgcgucguGCGccagGACCuccgugUCCGGACGc -3'
miRNA:   3'- uGCGCGUCGU-------------CGCa---CUGG------AGGCCUGU- -5'
25789 5' -60 NC_005337.1 + 82059 0.66 0.675452
Target:  5'- -aGCGCGGCcacgucccggGGCGUGAUgUagCGGACGc -3'
miRNA:   3'- ugCGCGUCG----------UCGCACUGgAg-GCCUGU- -5'
25789 5' -60 NC_005337.1 + 92680 0.66 0.675452
Target:  5'- gACGUGCucaccuuccugGGCGGCGgcGACCUCuacaacggCGGGCGg -3'
miRNA:   3'- -UGCGCG-----------UCGUCGCa-CUGGAG--------GCCUGU- -5'
25789 5' -60 NC_005337.1 + 68971 0.66 0.675452
Target:  5'- uGCGCGCGcGCAGCuUGcCCUCCuccuuGGCGa -3'
miRNA:   3'- -UGCGCGU-CGUCGcACuGGAGGc----CUGU- -5'
25789 5' -60 NC_005337.1 + 131924 0.66 0.675452
Target:  5'- -gGUGCuGCGGCGcgcUGGCC-CCGGAg- -3'
miRNA:   3'- ugCGCGuCGUCGC---ACUGGaGGCCUgu -5'
25789 5' -60 NC_005337.1 + 7418 0.66 0.675451
Target:  5'- -gGUGCAGCGGCGUccGGCCauacucgccCCGGAa- -3'
miRNA:   3'- ugCGCGUCGUCGCA--CUGGa--------GGCCUgu -5'
25789 5' -60 NC_005337.1 + 56433 0.66 0.675451
Target:  5'- uACGgGCAGCAGCGcgugGACggCgCGGugGc -3'
miRNA:   3'- -UGCgCGUCGUCGCa---CUGgaG-GCCugU- -5'
25789 5' -60 NC_005337.1 + 20779 0.67 0.664412
Target:  5'- cACGCGCuucGCggggacgGGCGUG-CCggagCUGGACAg -3'
miRNA:   3'- -UGCGCGu--CG-------UCGCACuGGa---GGCCUGU- -5'
25789 5' -60 NC_005337.1 + 57088 0.67 0.655356
Target:  5'- cACGCGCgAGaCGGCGacgcUGAUCUuCCGGAa- -3'
miRNA:   3'- -UGCGCG-UC-GUCGC----ACUGGA-GGCCUgu -5'
25789 5' -60 NC_005337.1 + 124611 0.67 0.655356
Target:  5'- aACGCGUGGCGcuggaggcauuGCGc-GCCUCCGGAg- -3'
miRNA:   3'- -UGCGCGUCGU-----------CGCacUGGAGGCCUgu -5'
25789 5' -60 NC_005337.1 + 1812 0.67 0.655356
Target:  5'- -aGUGCAGCGGCGUGuuC-CCGaACAc -3'
miRNA:   3'- ugCGCGUCGUCGCACugGaGGCcUGU- -5'
25789 5' -60 NC_005337.1 + 76688 0.67 0.655356
Target:  5'- aGCGCaGCAGCAGCGUGuaCUCCa---- -3'
miRNA:   3'- -UGCG-CGUCGUCGCACugGAGGccugu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.