miRNA display CGI


Results 1 - 20 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25789 5' -60 NC_005337.1 + 27131 1.07 0.001355
Target:  5'- cACGCGCAGCAGCGUGACCUCCGGACAc -3'
miRNA:   3'- -UGCGCGUCGUCGCACUGGAGGCCUGU- -5'
25789 5' -60 NC_005337.1 + 96836 0.71 0.432662
Target:  5'- gUGCGCAGCcgcGGCGUGGCguucccccggCUCCGcGACu -3'
miRNA:   3'- uGCGCGUCG---UCGCACUG----------GAGGC-CUGu -5'
25789 5' -60 NC_005337.1 + 46459 0.7 0.450511
Target:  5'- uGCGCGCGGC-GCGccggcGAgCUCCcGGGCAg -3'
miRNA:   3'- -UGCGCGUCGuCGCa----CUgGAGG-CCUGU- -5'
25789 5' -60 NC_005337.1 + 74936 0.66 0.724938
Target:  5'- cGCGCGCGGCcGCGcgGAUgcggugcuggggCUCCGcGGCu -3'
miRNA:   3'- -UGCGCGUCGuCGCa-CUG------------GAGGC-CUGu -5'
25789 5' -60 NC_005337.1 + 2124 0.75 0.225716
Target:  5'- cGCGUGCAGCGGCGUucugucaacGACgCcCCGGGCGu -3'
miRNA:   3'- -UGCGCGUCGUCGCA---------CUG-GaGGCCUGU- -5'
25789 5' -60 NC_005337.1 + 22661 0.74 0.279245
Target:  5'- gACGCGCGGCuGCGggagcGCUUCgCGGACAu -3'
miRNA:   3'- -UGCGCGUCGuCGCac---UGGAG-GCCUGU- -5'
25789 5' -60 NC_005337.1 + 84563 0.73 0.313121
Target:  5'- aACGCGCGGCAgcGCGUGACCgcgagGGugGa -3'
miRNA:   3'- -UGCGCGUCGU--CGCACUGGagg--CCugU- -5'
25789 5' -60 NC_005337.1 + 6424 0.73 0.320259
Target:  5'- cACGCaCAGCAGCGcGGCCUCCGa--- -3'
miRNA:   3'- -UGCGcGUCGUCGCaCUGGAGGCcugu -5'
25789 5' -60 NC_005337.1 + 29731 0.72 0.357763
Target:  5'- cGCGCGCGguguuGCGGCG-GACCagcgggCCGGGCu -3'
miRNA:   3'- -UGCGCGU-----CGUCGCaCUGGa-----GGCCUGu -5'
25789 5' -60 NC_005337.1 + 52106 0.71 0.43002
Target:  5'- cGCGUGCAGguGCGcgacgggccggccaUGGCCUUCguGGACGc -3'
miRNA:   3'- -UGCGCGUCguCGC--------------ACUGGAGG--CCUGU- -5'
25789 5' -60 NC_005337.1 + 2392 0.72 0.373603
Target:  5'- uGCGCGCccgccuccaggaGGCAGCGgacGACCUCgGGGuCGg -3'
miRNA:   3'- -UGCGCG------------UCGUCGCa--CUGGAGgCCU-GU- -5'
25789 5' -60 NC_005337.1 + 78556 0.72 0.357763
Target:  5'- cACGUaCAGCAGCGgguugugGGCCUCCauGGGCGc -3'
miRNA:   3'- -UGCGcGUCGUCGCa------CUGGAGG--CCUGU- -5'
25789 5' -60 NC_005337.1 + 42784 0.84 0.059585
Target:  5'- uCGgGCGGCAGCGUGACCUUCGuGGCGg -3'
miRNA:   3'- uGCgCGUCGUCGCACUGGAGGC-CUGU- -5'
25789 5' -60 NC_005337.1 + 29227 0.71 0.389912
Target:  5'- cCGCGCGGCcgGGCGUcGCCUgCCGGucGCAg -3'
miRNA:   3'- uGCGCGUCG--UCGCAcUGGA-GGCC--UGU- -5'
25789 5' -60 NC_005337.1 + 95715 0.83 0.071737
Target:  5'- cGCGCGCAGCAGC--GACC-CCGGACGg -3'
miRNA:   3'- -UGCGCGUCGUCGcaCUGGaGGCCUGU- -5'
25789 5' -60 NC_005337.1 + 42421 0.72 0.350021
Target:  5'- uGCGC-CGGCuucGGCGUGAgCUUCCGGGCc -3'
miRNA:   3'- -UGCGcGUCG---UCGCACU-GGAGGCCUGu -5'
25789 5' -60 NC_005337.1 + 3393 0.71 0.39824
Target:  5'- -gGUGCAGCGGCGUGuuGCCgCUGGAg- -3'
miRNA:   3'- ugCGCGUCGUCGCAC--UGGaGGCCUgu -5'
25789 5' -60 NC_005337.1 + 61229 0.7 0.450511
Target:  5'- gGCGauggacaGCcGCAGCGUGcCCUCCGuGACc -3'
miRNA:   3'- -UGCg------CGuCGUCGCACuGGAGGC-CUGu -5'
25789 5' -60 NC_005337.1 + 39662 0.77 0.168115
Target:  5'- cGCGUGgGGC-GCGUGGCC-CCGGGCAc -3'
miRNA:   3'- -UGCGCgUCGuCGCACUGGaGGCCUGU- -5'
25789 5' -60 NC_005337.1 + 90919 0.74 0.285779
Target:  5'- cACGCGCAGCGGCGU--CUUCCcGGCGg -3'
miRNA:   3'- -UGCGCGUCGUCGCAcuGGAGGcCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.