miRNA display CGI


Results 21 - 40 of 581 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25792 3' -62.8 NC_005337.1 + 71273 0.66 0.615029
Target:  5'- gCGCucaugCGcCGCGUGGCGCUgguGCGCuuccGCACGc -3'
miRNA:   3'- -GCG-----GCaGCGCGCCGUGG---UGCG----CGUGC- -5'
25792 3' -62.8 NC_005337.1 + 1668 0.66 0.615029
Target:  5'- gGCgCGUCGCGaaccugaaccGCAgCCGCaGCGCGCGu -3'
miRNA:   3'- gCG-GCAGCGCgc--------CGU-GGUG-CGCGUGC- -5'
25792 3' -62.8 NC_005337.1 + 77788 0.66 0.615029
Target:  5'- aGuuGgggagCGCGUacGGCAgCACGCGCcCGu -3'
miRNA:   3'- gCggCa----GCGCG--CCGUgGUGCGCGuGC- -5'
25792 3' -62.8 NC_005337.1 + 91380 0.66 0.615029
Target:  5'- aGCCG-CGCucgaagaccucgGCGGCGCCcCGCuccaGCACc -3'
miRNA:   3'- gCGGCaGCG------------CGCCGUGGuGCG----CGUGc -5'
25792 3' -62.8 NC_005337.1 + 108884 0.66 0.615029
Target:  5'- gGUCGUCGacgGCGGCGgCAgCGaGCGCGu -3'
miRNA:   3'- gCGGCAGCg--CGCCGUgGU-GCgCGUGC- -5'
25792 3' -62.8 NC_005337.1 + 50752 0.66 0.615029
Target:  5'- uGCuCGugaUCGCG-GGCG-CACGCGUGCGg -3'
miRNA:   3'- gCG-GC---AGCGCgCCGUgGUGCGCGUGC- -5'
25792 3' -62.8 NC_005337.1 + 75834 0.66 0.613078
Target:  5'- uGCacugCGUCGCggcauaaacaggaGCGGCGCCGCcgcgaugGCGUACa -3'
miRNA:   3'- gCG----GCAGCG-------------CGCCGUGGUG-------CGCGUGc -5'
25792 3' -62.8 NC_005337.1 + 75902 0.66 0.60528
Target:  5'- cCGCCGacgUUGCGCGcGaaguCCGCGaagaGCGCGg -3'
miRNA:   3'- -GCGGC---AGCGCGC-Cgu--GGUGCg---CGUGC- -5'
25792 3' -62.8 NC_005337.1 + 85396 0.66 0.60528
Target:  5'- uGCCGU-GCGCGGCGCUcucCGC-CGa -3'
miRNA:   3'- gCGGCAgCGCGCCGUGGugcGCGuGC- -5'
25792 3' -62.8 NC_005337.1 + 25522 0.66 0.60528
Target:  5'- gCGCUccagGCaGCGGC-CCACGCGcCGCGa -3'
miRNA:   3'- -GCGGcag-CG-CGCCGuGGUGCGC-GUGC- -5'
25792 3' -62.8 NC_005337.1 + 34678 0.66 0.60528
Target:  5'- uCGCCGUCcagGCccagcacggucaGCGuGCACuCGCGCgGCAUGg -3'
miRNA:   3'- -GCGGCAG---CG------------CGC-CGUG-GUGCG-CGUGC- -5'
25792 3' -62.8 NC_005337.1 + 95964 0.66 0.60528
Target:  5'- gGUCGUUGCGCu---CgACGCGCGCGc -3'
miRNA:   3'- gCGGCAGCGCGccguGgUGCGCGUGC- -5'
25792 3' -62.8 NC_005337.1 + 88503 0.66 0.60528
Target:  5'- uGCCGUcauggacagcgcCGCGCGGUACgaACGCGgGg- -3'
miRNA:   3'- gCGGCA------------GCGCGCCGUGg-UGCGCgUgc -5'
25792 3' -62.8 NC_005337.1 + 89178 0.66 0.60528
Target:  5'- gCGCCGagGCGUcuauuacguagGGCACguCG-GCACGg -3'
miRNA:   3'- -GCGGCagCGCG-----------CCGUGguGCgCGUGC- -5'
25792 3' -62.8 NC_005337.1 + 27195 0.66 0.60528
Target:  5'- -uCCG-CGCacaGCGGCAcccCCugGCGCGCc -3'
miRNA:   3'- gcGGCaGCG---CGCCGU---GGugCGCGUGc -5'
25792 3' -62.8 NC_005337.1 + 11738 0.66 0.60528
Target:  5'- gGCUGcagCGCGCGuCGCCGCGC-CAgGg -3'
miRNA:   3'- gCGGCa--GCGCGCcGUGGUGCGcGUgC- -5'
25792 3' -62.8 NC_005337.1 + 104297 0.66 0.604306
Target:  5'- gGCgGUCcgcgaggGCGCGGCGgCGCucuGCGUGCGu -3'
miRNA:   3'- gCGgCAG-------CGCGCCGUgGUG---CGCGUGC- -5'
25792 3' -62.8 NC_005337.1 + 71233 0.66 0.602358
Target:  5'- gGCUGUCGCGCaccucguacugcucGGUugCuuCGuCGCACa -3'
miRNA:   3'- gCGGCAGCGCG--------------CCGugGu-GC-GCGUGc -5'
25792 3' -62.8 NC_005337.1 + 737 0.66 0.595548
Target:  5'- aCGCgGgcgagaGCGCGGCGCC-CGCGgCcucgACGg -3'
miRNA:   3'- -GCGgCag----CGCGCCGUGGuGCGC-G----UGC- -5'
25792 3' -62.8 NC_005337.1 + 120156 0.66 0.595548
Target:  5'- -uUCGUcCGCGUGGcCACCGCcCGCAUa -3'
miRNA:   3'- gcGGCA-GCGCGCC-GUGGUGcGCGUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.