miRNA display CGI


Results 21 - 40 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25792 5' -57.7 NC_005337.1 + 23049 0.69 0.689967
Target:  5'- gUUCGUGA-CGCacGCCgCGCGCCGGa -3'
miRNA:   3'- -AGGCACUaGUGcuUGGgGUGCGGCCa -5'
25792 5' -57.7 NC_005337.1 + 79371 0.69 0.68397
Target:  5'- gUCCGUGAUCACggagguggugugguuGAgcuGCUCCACGCggCGGc -3'
miRNA:   3'- -AGGCACUAGUG---------------CU---UGGGGUGCG--GCCa -5'
25792 5' -57.7 NC_005337.1 + 23128 0.71 0.55921
Target:  5'- gCCGUGGUCGCGGccaugcGCCCCuucCuCCGGg -3'
miRNA:   3'- aGGCACUAGUGCU------UGGGGu--GcGGCCa -5'
25792 5' -57.7 NC_005337.1 + 102768 0.74 0.410022
Target:  5'- aCCGUGAgcaucCACGuGCUgaCCACGCCGGg -3'
miRNA:   3'- aGGCACUa----GUGCuUGG--GGUGCGGCCa -5'
25792 5' -57.7 NC_005337.1 + 30893 0.67 0.766629
Target:  5'- cUUCG-GGUCguagcgacggcagGCGAGCCCUGCGCCGa- -3'
miRNA:   3'- -AGGCaCUAG-------------UGCUUGGGGUGCGGCca -5'
25792 5' -57.7 NC_005337.1 + 11868 0.68 0.70587
Target:  5'- cCCGUGAgcgaggcgcugccCACGuaccacuGCCCCGCGuuGGa -3'
miRNA:   3'- aGGCACUa------------GUGCu------UGGGGUGCggCCa -5'
25792 5' -57.7 NC_005337.1 + 49689 0.69 0.669923
Target:  5'- cUCGUGGUCACccacaccagcGCCCCgggcucggcGCGCCGGUu -3'
miRNA:   3'- aGGCACUAGUGcu--------UGGGG---------UGCGGCCA- -5'
25792 5' -57.7 NC_005337.1 + 68851 0.74 0.410022
Target:  5'- cUCCGcGA-CGCcccAGCCCCGCGCCGGa -3'
miRNA:   3'- -AGGCaCUaGUGc--UUGGGGUGCGGCCa -5'
25792 5' -57.7 NC_005337.1 + 82780 0.68 0.699923
Target:  5'- aUCG-GGUgCACGAACCCCACcgaGUCGGc -3'
miRNA:   3'- aGGCaCUA-GUGCUUGGGGUG---CGGCCa -5'
25792 5' -57.7 NC_005337.1 + 50339 0.74 0.410022
Target:  5'- aUCCGcu-UCuccaaGAACCCCACGCCGGc -3'
miRNA:   3'- -AGGCacuAGug---CUUGGGGUGCGGCCa -5'
25792 5' -57.7 NC_005337.1 + 76010 0.69 0.679964
Target:  5'- gCCGUGcgCcgguacacGCGGaagACCgCCGCGCCGGa -3'
miRNA:   3'- aGGCACuaG--------UGCU---UGG-GGUGCGGCCa -5'
25792 5' -57.7 NC_005337.1 + 100237 0.69 0.689967
Target:  5'- -gCGUGAUCGCGGucccGCCCgcCAUGaCCGGg -3'
miRNA:   3'- agGCACUAGUGCU----UGGG--GUGC-GGCCa -5'
25792 5' -57.7 NC_005337.1 + 44003 0.7 0.609328
Target:  5'- gUUCGUGAgCACGGugUCCGCGugcuaCCGGUa -3'
miRNA:   3'- -AGGCACUaGUGCUugGGGUGC-----GGCCA- -5'
25792 5' -57.7 NC_005337.1 + 50754 0.71 0.55921
Target:  5'- cUCGUGAUCGCGGGCgCaCGCGUgCGGUu -3'
miRNA:   3'- aGGCACUAGUGCUUGgG-GUGCG-GCCA- -5'
25792 5' -57.7 NC_005337.1 + 74489 0.72 0.500738
Target:  5'- cUCGUGGUCGCGug-CCgGCGCCGGc -3'
miRNA:   3'- aGGCACUAGUGCuugGGgUGCGGCCa -5'
25792 5' -57.7 NC_005337.1 + 115326 0.73 0.427358
Target:  5'- aCCGUGcUCGCGAcGCCCgGCGgCGGg -3'
miRNA:   3'- aGGCACuAGUGCU-UGGGgUGCgGCCa -5'
25792 5' -57.7 NC_005337.1 + 90543 0.67 0.794964
Target:  5'- aCgGUGAUCACGgu-CUgGCGCCGGc -3'
miRNA:   3'- aGgCACUAGUGCuugGGgUGCGGCCa -5'
25792 5' -57.7 NC_005337.1 + 110792 0.67 0.767562
Target:  5'- aCCG-GAgCACGuuCUCCACGUCGGa -3'
miRNA:   3'- aGGCaCUaGUGCuuGGGGUGCGGCCa -5'
25792 5' -57.7 NC_005337.1 + 23763 0.68 0.739102
Target:  5'- gCCGUGuucaccacgCGCGAGCgCCACGUCGa- -3'
miRNA:   3'- aGGCACua-------GUGCUUGgGGUGCGGCca -5'
25792 5' -57.7 NC_005337.1 + 99378 0.68 0.719659
Target:  5'- cCCGUGGacgCGCGGcACCaCC-UGCCGGUg -3'
miRNA:   3'- aGGCACUa--GUGCU-UGG-GGuGCGGCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.