miRNA display CGI


Results 21 - 40 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25792 5' -57.7 NC_005337.1 + 126199 0.67 0.803821
Target:  5'- cUCGUGccCACGGACgCCACGCgCGaGUg -3'
miRNA:   3'- aGGCACuaGUGCUUGgGGUGCG-GC-CA- -5'
25792 5' -57.7 NC_005337.1 + 126400 0.67 0.803821
Target:  5'- aCgGUGAUCACGGccaaggccGCCCgGCGCgCGa- -3'
miRNA:   3'- aGgCACUAGUGCU--------UGGGgUGCG-GCca -5'
25792 5' -57.7 NC_005337.1 + 95932 0.67 0.803821
Target:  5'- -gCGUGAUgcgcagCGCGuacucGCCCgGCGCCGGc -3'
miRNA:   3'- agGCACUA------GUGCu----UGGGgUGCGGCCa -5'
25792 5' -57.7 NC_005337.1 + 30857 0.67 0.803821
Target:  5'- cUCgGUGAcCACaAGCCCCAgcUGCUGGg -3'
miRNA:   3'- -AGgCACUaGUGcUUGGGGU--GCGGCCa -5'
25792 5' -57.7 NC_005337.1 + 107669 0.67 0.803821
Target:  5'- aCCGUGGagCugGAggACCCCGCGugucgcucccCCGGc -3'
miRNA:   3'- aGGCACUa-GugCU--UGGGGUGC----------GGCCa -5'
25792 5' -57.7 NC_005337.1 + 50696 0.67 0.802942
Target:  5'- gUUgGUGGaCGCGGACCCCcuguuuuGCGCgGGa -3'
miRNA:   3'- -AGgCACUaGUGCUUGGGG-------UGCGgCCa -5'
25792 5' -57.7 NC_005337.1 + 37987 0.67 0.794964
Target:  5'- ----aGAUCAUGcACCCCAacgcCGCCGGg -3'
miRNA:   3'- aggcaCUAGUGCuUGGGGU----GCGGCCa -5'
25792 5' -57.7 NC_005337.1 + 90543 0.67 0.794964
Target:  5'- aCgGUGAUCACGgu-CUgGCGCCGGc -3'
miRNA:   3'- aGgCACUAGUGCuugGGgUGCGGCCa -5'
25792 5' -57.7 NC_005337.1 + 112255 0.67 0.785962
Target:  5'- gCCGggcGAaCACGAGCUCCAUGucCCGGa -3'
miRNA:   3'- aGGCa--CUaGUGCUUGGGGUGC--GGCCa -5'
25792 5' -57.7 NC_005337.1 + 77024 0.67 0.776825
Target:  5'- cCCGUGcc--CGAACCa-GCGCCGGUg -3'
miRNA:   3'- aGGCACuaguGCUUGGggUGCGGCCA- -5'
25792 5' -57.7 NC_005337.1 + 127675 0.67 0.776825
Target:  5'- aUCCaGaUGggCGCcGACCUgGCGCCGGUg -3'
miRNA:   3'- -AGG-C-ACuaGUGcUUGGGgUGCGGCCA- -5'
25792 5' -57.7 NC_005337.1 + 113871 0.67 0.776825
Target:  5'- aCCgGUGGUCACGAccacuGCCCucucuucaCAUGCaCGGUg -3'
miRNA:   3'- aGG-CACUAGUGCU-----UGGG--------GUGCG-GCCA- -5'
25792 5' -57.7 NC_005337.1 + 104898 0.67 0.767562
Target:  5'- aUCCgGUGcUCGaagcUGAGCCUCuCGCCGGUg -3'
miRNA:   3'- -AGG-CACuAGU----GCUUGGGGuGCGGCCA- -5'
25792 5' -57.7 NC_005337.1 + 110792 0.67 0.767562
Target:  5'- aCCG-GAgCACGuuCUCCACGUCGGa -3'
miRNA:   3'- aGGCaCUaGUGCuuGGGGUGCGGCCa -5'
25792 5' -57.7 NC_005337.1 + 30893 0.67 0.766629
Target:  5'- cUUCG-GGUCguagcgacggcagGCGAGCCCUGCGCCGa- -3'
miRNA:   3'- -AGGCaCUAG-------------UGCUUGGGGUGCGGCca -5'
25792 5' -57.7 NC_005337.1 + 117346 0.67 0.766629
Target:  5'- gCCGUGGUCuuccucgACGAGCCCgu-GCUGGUc -3'
miRNA:   3'- aGGCACUAG-------UGCUUGGGgugCGGCCA- -5'
25792 5' -57.7 NC_005337.1 + 71470 0.67 0.758181
Target:  5'- gCCGcaGGUCucgcUGGACgCCACGCCGGa -3'
miRNA:   3'- aGGCa-CUAGu---GCUUGgGGUGCGGCCa -5'
25792 5' -57.7 NC_005337.1 + 125094 0.68 0.748692
Target:  5'- cCCGUGGUgcCAUGGACCCagACGCUGa- -3'
miRNA:   3'- aGGCACUA--GUGCUUGGGg-UGCGGCca -5'
25792 5' -57.7 NC_005337.1 + 34049 0.68 0.748692
Target:  5'- aCCGcGAUCACGcgcACgCgGCGCCGGc -3'
miRNA:   3'- aGGCaCUAGUGCu--UGgGgUGCGGCCa -5'
25792 5' -57.7 NC_005337.1 + 48372 0.68 0.739102
Target:  5'- cUgGUGGcCAUGGugCCCAUGCUGGa -3'
miRNA:   3'- aGgCACUaGUGCUugGGGUGCGGCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.