miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25794 3' -55.5 NC_005337.1 + 100313 0.67 0.873166
Target:  5'- gGCCcUGGCCgagagCUUCG-GGAUccuGGACUCc -3'
miRNA:   3'- -CGGuGCCGGa----GAAGCaUCUG---CCUGAG- -5'
25794 3' -55.5 NC_005337.1 + 98339 0.67 0.873166
Target:  5'- cGgCACGGaCUUCgucacgcaCGUGGACGGGCg- -3'
miRNA:   3'- -CgGUGCC-GGAGaa------GCAUCUGCCUGag -5'
25794 3' -55.5 NC_005337.1 + 131464 0.67 0.865725
Target:  5'- gGCCugGGCUUCUccUCGcacGCGGAguucCUCa -3'
miRNA:   3'- -CGGugCCGGAGA--AGCaucUGCCU----GAG- -5'
25794 3' -55.5 NC_005337.1 + 65239 0.67 0.865725
Target:  5'- cGCCcuGCGGCUcgCcUCGgAGACGGAgUCc -3'
miRNA:   3'- -CGG--UGCCGGa-GaAGCaUCUGCCUgAG- -5'
25794 3' -55.5 NC_005337.1 + 59028 0.67 0.86497
Target:  5'- uGCgCGCGGCCUucaccgaCUUCGcgccgcuGGCGGACg- -3'
miRNA:   3'- -CG-GUGCCGGA-------GAAGCau-----CUGCCUGag -5'
25794 3' -55.5 NC_005337.1 + 87693 0.67 0.86497
Target:  5'- -aCGCGGCCUCccgcgCGgggGGACGcauauucGACUCg -3'
miRNA:   3'- cgGUGCCGGAGaa---GCa--UCUGC-------CUGAG- -5'
25794 3' -55.5 NC_005337.1 + 87450 0.67 0.858072
Target:  5'- -aCGCGGCucacCUCgccgUCGUAGACGacGCUCg -3'
miRNA:   3'- cgGUGCCG----GAGa---AGCAUCUGCc-UGAG- -5'
25794 3' -55.5 NC_005337.1 + 99709 0.67 0.858072
Target:  5'- uGCgCGCGGCCaUCgUCGcGGACaGGACg- -3'
miRNA:   3'- -CG-GUGCCGG-AGaAGCaUCUG-CCUGag -5'
25794 3' -55.5 NC_005337.1 + 103074 0.67 0.858072
Target:  5'- -gCACGGCCgaCUUCGUGGA---GCUCa -3'
miRNA:   3'- cgGUGCCGGa-GAAGCAUCUgccUGAG- -5'
25794 3' -55.5 NC_005337.1 + 99678 0.67 0.858072
Target:  5'- uCCGCGGCCUgggCGUGG-UGGACcCg -3'
miRNA:   3'- cGGUGCCGGAgaaGCAUCuGCCUGaG- -5'
25794 3' -55.5 NC_005337.1 + 82590 0.67 0.850212
Target:  5'- gGCCAgacUGGCCUCgcCGUAGGCguccagGGGCg- -3'
miRNA:   3'- -CGGU---GCCGGAGaaGCAUCUG------CCUGag -5'
25794 3' -55.5 NC_005337.1 + 21405 0.67 0.850212
Target:  5'- gGCCGCGGCaucgUCgaCGUGGgccGCGGccaGCUCg -3'
miRNA:   3'- -CGGUGCCGg---AGaaGCAUC---UGCC---UGAG- -5'
25794 3' -55.5 NC_005337.1 + 94708 0.68 0.842152
Target:  5'- -aCGCGGCCggugUCGUAGACGuGCg- -3'
miRNA:   3'- cgGUGCCGGaga-AGCAUCUGCcUGag -5'
25794 3' -55.5 NC_005337.1 + 84827 0.68 0.833898
Target:  5'- uGCCGCGGUaccaUCUggaGUAcauGACGGAcCUCu -3'
miRNA:   3'- -CGGUGCCGg---AGAag-CAU---CUGCCU-GAG- -5'
25794 3' -55.5 NC_005337.1 + 63492 0.68 0.833898
Target:  5'- cGCCGCauGGCCUCcgagUCGgccGCGGcCUCg -3'
miRNA:   3'- -CGGUG--CCGGAGa---AGCaucUGCCuGAG- -5'
25794 3' -55.5 NC_005337.1 + 35336 0.68 0.833898
Target:  5'- gGCCugGGCCguguUCggugagUCGUcggacggcuggcGGGCGGACg- -3'
miRNA:   3'- -CGGugCCGG----AGa-----AGCA------------UCUGCCUGag -5'
25794 3' -55.5 NC_005337.1 + 101003 0.68 0.833062
Target:  5'- cGCCACgcucgcgGGCCUCUggaUGgcG-UGGACUCg -3'
miRNA:   3'- -CGGUG-------CCGGAGAa--GCauCuGCCUGAG- -5'
25794 3' -55.5 NC_005337.1 + 63857 0.68 0.825459
Target:  5'- aCCAgGGCCUgaUCuuGUGGGCaaGGACUCc -3'
miRNA:   3'- cGGUgCCGGAgaAG--CAUCUG--CCUGAG- -5'
25794 3' -55.5 NC_005337.1 + 41777 0.68 0.825459
Target:  5'- aGCCGuCGGCCuUCUUCGgcaucaccAGGuCGGcCUCg -3'
miRNA:   3'- -CGGU-GCCGG-AGAAGCa-------UCU-GCCuGAG- -5'
25794 3' -55.5 NC_005337.1 + 41638 0.68 0.816842
Target:  5'- cGCC-CGGCgUCUcCGUGGAuCGGGaUCg -3'
miRNA:   3'- -CGGuGCCGgAGAaGCAUCU-GCCUgAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.