miRNA display CGI


Results 21 - 40 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25794 5' -60.1 NC_005337.1 + 127881 0.68 0.577745
Target:  5'- cUGGuGGCgCGcgGCGCCGGcGAGcGCGUg- -3'
miRNA:   3'- -ACCuCCG-GCa-CGCGGUC-CUC-CGUAac -5'
25794 5' -60.1 NC_005337.1 + 10409 0.68 0.557731
Target:  5'- gUGGAGGUgCGgcUGCGcCCAGGAGGaCGc-- -3'
miRNA:   3'- -ACCUCCG-GC--ACGC-GGUCCUCC-GUaac -5'
25794 5' -60.1 NC_005337.1 + 120616 0.68 0.546806
Target:  5'- aGGAGGCCGgcaagacggGCGUCacgaucgAGGAGGUg--- -3'
miRNA:   3'- aCCUCCGGCa--------CGCGG-------UCCUCCGuaac -5'
25794 5' -60.1 NC_005337.1 + 9758 0.68 0.528103
Target:  5'- cGucGGCCG-GCGCCGGGuuGGCAc-- -3'
miRNA:   3'- aCcuCCGGCaCGCGGUCCu-CCGUaac -5'
25794 5' -60.1 NC_005337.1 + 74177 0.68 0.528103
Target:  5'- gGGAGGCgCGcucGgGCCGGGAgucGGCGUUc -3'
miRNA:   3'- aCCUCCG-GCa--CgCGGUCCU---CCGUAAc -5'
25794 5' -60.1 NC_005337.1 + 11389 0.69 0.515444
Target:  5'- cGGcGGGCUGaUGCGCCAGGgccccggguuccgcAGGCGc-- -3'
miRNA:   3'- aCC-UCCGGC-ACGCGGUCC--------------UCCGUaac -5'
25794 5' -60.1 NC_005337.1 + 65991 0.69 0.508678
Target:  5'- gUGcGAGGCCGUGCGUCccgugGGcGAGcGCGUg- -3'
miRNA:   3'- -AC-CUCCGGCACGCGG-----UC-CUC-CGUAac -5'
25794 5' -60.1 NC_005337.1 + 40538 0.69 0.499079
Target:  5'- aGGAGGCU-UGCGCCGgcgggucgcuGGAGGCc--- -3'
miRNA:   3'- aCCUCCGGcACGCGGU----------CCUCCGuaac -5'
25794 5' -60.1 NC_005337.1 + 32228 0.69 0.489561
Target:  5'- cGGAGG-CGUGCuCCGGGAagcaGGCGUa- -3'
miRNA:   3'- aCCUCCgGCACGcGGUCCU----CCGUAac -5'
25794 5' -60.1 NC_005337.1 + 38572 0.69 0.480129
Target:  5'- cGGAcuCCGUGCacGCCaAGGAGGCGUg- -3'
miRNA:   3'- aCCUccGGCACG--CGG-UCCUCCGUAac -5'
25794 5' -60.1 NC_005337.1 + 31912 0.69 0.480129
Target:  5'- cGGuGGCCagGUGCGCgGccucGGGGGCAUg- -3'
miRNA:   3'- aCCuCCGG--CACGCGgU----CCUCCGUAac -5'
25794 5' -60.1 NC_005337.1 + 124602 0.7 0.443332
Target:  5'- cGGAuGCCGaacgcgugGCGCU-GGAGGCAUUGc -3'
miRNA:   3'- aCCUcCGGCa-------CGCGGuCCUCCGUAAC- -5'
25794 5' -60.1 NC_005337.1 + 88779 0.7 0.425538
Target:  5'- gUGGAGGCCuucgacGUGCGUCcGGAGaGCGg-- -3'
miRNA:   3'- -ACCUCCGG------CACGCGGuCCUC-CGUaac -5'
25794 5' -60.1 NC_005337.1 + 59179 0.71 0.391265
Target:  5'- --cAGGCCGUGCGUCGGGGcaccGGCGa-- -3'
miRNA:   3'- accUCCGGCACGCGGUCCU----CCGUaac -5'
25794 5' -60.1 NC_005337.1 + 107067 0.71 0.366769
Target:  5'- cGGcGGCgGcGCGCCAGGGGGUg--- -3'
miRNA:   3'- aCCuCCGgCaCGCGGUCCUCCGuaac -5'
25794 5' -60.1 NC_005337.1 + 97799 0.72 0.328347
Target:  5'- cGGccAGGCCGUGCGgCAGGuGGUg--- -3'
miRNA:   3'- aCC--UCCGGCACGCgGUCCuCCGuaac -5'
25794 5' -60.1 NC_005337.1 + 130172 0.73 0.286277
Target:  5'- cGGAGGCCGUGCGCgC-GGAGcacGCGg-- -3'
miRNA:   3'- aCCUCCGGCACGCG-GuCCUC---CGUaac -5'
25794 5' -60.1 NC_005337.1 + 102846 0.74 0.254559
Target:  5'- aUGGucGGGCCGcGCGCCAGGaAGuGCAUg- -3'
miRNA:   3'- -ACC--UCCGGCaCGCGGUCC-UC-CGUAac -5'
25794 5' -60.1 NC_005337.1 + 1017 0.75 0.225238
Target:  5'- cUGGAGGCCGUcgaauuucacuuuGCG-CGGGAGGCGg-- -3'
miRNA:   3'- -ACCUCCGGCA-------------CGCgGUCCUCCGUaac -5'
25794 5' -60.1 NC_005337.1 + 1017 0.75 0.225238
Target:  5'- cUGGAGGCCGUcgaauuucacuuuGCG-CGGGAGGCGg-- -3'
miRNA:   3'- -ACCUCCGGCA-------------CGCgGUCCUCCGUaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.