miRNA display CGI


Results 21 - 40 of 156 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25797 3' -59.6 NC_005337.1 + 95822 0.66 0.743906
Target:  5'- gGGGUCCAUGuCCGg-CAGcAGGCagaaCCGCg -3'
miRNA:   3'- gCUCAGGUGC-GGUagGUC-UCCG----GGCG- -5'
25797 3' -59.6 NC_005337.1 + 37684 0.66 0.743906
Target:  5'- --uGUUCACGcCCGUgUGGAcGCCCGCg -3'
miRNA:   3'- gcuCAGGUGC-GGUAgGUCUcCGGGCG- -5'
25797 3' -59.6 NC_005337.1 + 70439 0.66 0.743906
Target:  5'- -uGGUgCGCGUCcUCCAG-GGUCUGCu -3'
miRNA:   3'- gcUCAgGUGCGGuAGGUCuCCGGGCG- -5'
25797 3' -59.6 NC_005337.1 + 12619 0.66 0.743906
Target:  5'- -aGGUCCACGaCC--UCGGGGGUcgCCGCg -3'
miRNA:   3'- gcUCAGGUGC-GGuaGGUCUCCG--GGCG- -5'
25797 3' -59.6 NC_005337.1 + 77749 0.66 0.743906
Target:  5'- gCGAGUugaugauguacCCGCGCg--CCucGGGGUCCGCg -3'
miRNA:   3'- -GCUCA-----------GGUGCGguaGGu-CUCCGGGCG- -5'
25797 3' -59.6 NC_005337.1 + 127853 0.66 0.741053
Target:  5'- gGAGgCCGCGCUgcugugcgugcacaGUCUGGuGGCgCGCg -3'
miRNA:   3'- gCUCaGGUGCGG--------------UAGGUCuCCGgGCG- -5'
25797 3' -59.6 NC_005337.1 + 130663 0.66 0.738191
Target:  5'- gCGAGggacgucuacggcgCUACGCCG-CUGGGGGCgCUGCu -3'
miRNA:   3'- -GCUCa-------------GGUGCGGUaGGUCUCCG-GGCG- -5'
25797 3' -59.6 NC_005337.1 + 16047 0.66 0.734363
Target:  5'- uCGGGcUCCGCGCacugcaugaugaCGUCgGGcGGCuCCGCg -3'
miRNA:   3'- -GCUC-AGGUGCG------------GUAGgUCuCCG-GGCG- -5'
25797 3' -59.6 NC_005337.1 + 38515 0.66 0.734363
Target:  5'- cCGGG--CGCGCCugGUgCAG-GGCCCGCc -3'
miRNA:   3'- -GCUCagGUGCGG--UAgGUCuCCGGGCG- -5'
25797 3' -59.6 NC_005337.1 + 99409 0.66 0.734363
Target:  5'- aGAGUUCACGUCGga-GGAuGGCgCGCc -3'
miRNA:   3'- gCUCAGGUGCGGUaggUCU-CCGgGCG- -5'
25797 3' -59.6 NC_005337.1 + 98256 0.66 0.724735
Target:  5'- -cAGUCCGuguCGCCGUCCAcGAcGGuggucaCCCGCu -3'
miRNA:   3'- gcUCAGGU---GCGGUAGGU-CU-CC------GGGCG- -5'
25797 3' -59.6 NC_005337.1 + 56566 0.66 0.724735
Target:  5'- cCGGGUCCcaguucuacuuCGCCAUgCUGGuGGCgCGCu -3'
miRNA:   3'- -GCUCAGGu----------GCGGUA-GGUCuCCGgGCG- -5'
25797 3' -59.6 NC_005337.1 + 20112 0.66 0.724735
Target:  5'- gCGAGagCGCGUCcUCCaccgAGAGGUCgGCg -3'
miRNA:   3'- -GCUCagGUGCGGuAGG----UCUCCGGgCG- -5'
25797 3' -59.6 NC_005337.1 + 73356 0.66 0.7228
Target:  5'- cCGcGUgUACGCCAUCCugcaggaacucucGGAGgcguacucggcgcGCCCGCa -3'
miRNA:   3'- -GCuCAgGUGCGGUAGG-------------UCUC-------------CGGGCG- -5'
25797 3' -59.6 NC_005337.1 + 86427 0.66 0.721832
Target:  5'- cCGAcGUgCACucgcggaagagacgGUCGUCgCAGAGGCCgGCg -3'
miRNA:   3'- -GCU-CAgGUG--------------CGGUAG-GUCUCCGGgCG- -5'
25797 3' -59.6 NC_005337.1 + 26438 0.66 0.719892
Target:  5'- uCGucUCCACGCCGUagugcucCCAGAGGUacagacagaggcaCGCg -3'
miRNA:   3'- -GCucAGGUGCGGUA-------GGUCUCCGg------------GCG- -5'
25797 3' -59.6 NC_005337.1 + 23645 0.66 0.715031
Target:  5'- aCGAGa--GCGUCGUCCGGAGGgaccucgacCCCGg -3'
miRNA:   3'- -GCUCaggUGCGGUAGGUCUCC---------GGGCg -5'
25797 3' -59.6 NC_005337.1 + 53226 0.66 0.715031
Target:  5'- gCGAGcUCCGCGagauCAUggacaggcaCCAGAuacGGCCCGUg -3'
miRNA:   3'- -GCUC-AGGUGCg---GUA---------GGUCU---CCGGGCG- -5'
25797 3' -59.6 NC_005337.1 + 89603 0.66 0.714057
Target:  5'- -cGG-CCACGCCuAUCuCGGAGucgcccacguagcGCCCGCu -3'
miRNA:   3'- gcUCaGGUGCGG-UAG-GUCUC-------------CGGGCG- -5'
25797 3' -59.6 NC_005337.1 + 19579 0.67 0.706239
Target:  5'- uGAG-CCGCGCgaggaucuccacugCGUCCAGcggagaggcggccucGaGGCCCGCg -3'
miRNA:   3'- gCUCaGGUGCG--------------GUAGGUC---------------U-CCGGGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.