miRNA display CGI


Results 21 - 40 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25797 5' -51.4 NC_005337.1 + 127244 0.66 0.985426
Target:  5'- cCGACGugcucGGCCuGAUGcuGGAGGCGggCg -3'
miRNA:   3'- -GCUGC-----UCGGuCUGCuuCUUCUGCuaG- -5'
25797 5' -51.4 NC_005337.1 + 110009 0.66 0.985426
Target:  5'- cCGGCcAGCU-GACGuGGAAGGCGAacUCg -3'
miRNA:   3'- -GCUGcUCGGuCUGCuUCUUCUGCU--AG- -5'
25797 5' -51.4 NC_005337.1 + 58221 0.66 0.985426
Target:  5'- gGGCGAGCUGGAgGAGGccGcCGAg- -3'
miRNA:   3'- gCUGCUCGGUCUgCUUCuuCuGCUag -5'
25797 5' -51.4 NC_005337.1 + 68962 0.66 0.985426
Target:  5'- cCGGCGuGCCcuuccAGuCGcccgacuucagcAAGAAGACGAUCc -3'
miRNA:   3'- -GCUGCuCGG-----UCuGC------------UUCUUCUGCUAG- -5'
25797 5' -51.4 NC_005337.1 + 104273 0.66 0.985426
Target:  5'- cCGACGAGaCCGagcugcccuacGACGAGGAcGG-GAUCa -3'
miRNA:   3'- -GCUGCUC-GGU-----------CUGCUUCUuCUgCUAG- -5'
25797 5' -51.4 NC_005337.1 + 96143 0.66 0.983572
Target:  5'- cCGGUGAGCCGGaacgcguagaugGCGAAGAGGAgccCGAg- -3'
miRNA:   3'- -GCUGCUCGGUC------------UGCUUCUUCU---GCUag -5'
25797 5' -51.4 NC_005337.1 + 17682 0.67 0.981544
Target:  5'- aGGCuGAGUcgCAGACGAAGuAGACucuGAUCc -3'
miRNA:   3'- gCUG-CUCG--GUCUGCUUCuUCUG---CUAG- -5'
25797 5' -51.4 NC_005337.1 + 17778 0.67 0.981544
Target:  5'- aGGCuGAGUcgCAGACGAAGuAGACucuGAUCc -3'
miRNA:   3'- gCUG-CUCG--GUCUGCUUCuUCUG---CUAG- -5'
25797 5' -51.4 NC_005337.1 + 15706 0.67 0.979335
Target:  5'- aCGACGuGCCGGACGucGu--GCGAg- -3'
miRNA:   3'- -GCUGCuCGGUCUGCuuCuucUGCUag -5'
25797 5' -51.4 NC_005337.1 + 66078 0.67 0.979335
Target:  5'- gGACGcGGCCGcGGCGgcGGAGGCGc-- -3'
miRNA:   3'- gCUGC-UCGGU-CUGCuuCUUCUGCuag -5'
25797 5' -51.4 NC_005337.1 + 79151 0.67 0.979335
Target:  5'- aGACcacGCCGGACGAGGGcaccuccACGAUCu -3'
miRNA:   3'- gCUGcu-CGGUCUGCUUCUuc-----UGCUAG- -5'
25797 5' -51.4 NC_005337.1 + 132307 0.67 0.979335
Target:  5'- cCGGCGuGCaCGGcgGCGGAGggGGCGc-- -3'
miRNA:   3'- -GCUGCuCG-GUC--UGCUUCuuCUGCuag -5'
25797 5' -51.4 NC_005337.1 + 10590 0.67 0.979104
Target:  5'- gCGACGAGcCCGGucccgccGCGggGGAGcgGCGGc- -3'
miRNA:   3'- -GCUGCUC-GGUC-------UGCuuCUUC--UGCUag -5'
25797 5' -51.4 NC_005337.1 + 88940 0.67 0.978636
Target:  5'- -uGCGAGCUcgcggaccgcgcggAGGCGGAGGGcGCGGUCc -3'
miRNA:   3'- gcUGCUCGG--------------UCUGCUUCUUcUGCUAG- -5'
25797 5' -51.4 NC_005337.1 + 49975 0.67 0.976936
Target:  5'- -cACGAGCUGGcucACGGAGAAGGUGAUg -3'
miRNA:   3'- gcUGCUCGGUC---UGCUUCUUCUGCUAg -5'
25797 5' -51.4 NC_005337.1 + 90170 0.67 0.976936
Target:  5'- cCGACGcugaucccuGCCAGGcCGggGAAGAa-GUCg -3'
miRNA:   3'- -GCUGCu--------CGGUCU-GCuuCUUCUgcUAG- -5'
25797 5' -51.4 NC_005337.1 + 47579 0.67 0.974337
Target:  5'- cCGACGAGCCgcagccgcuGGGCGuGGgcGACGccgCg -3'
miRNA:   3'- -GCUGCUCGG---------UCUGCuUCuuCUGCua-G- -5'
25797 5' -51.4 NC_005337.1 + 81845 0.67 0.974337
Target:  5'- ---aGAGCCAGGgcccggcguccgUGAAGAGGAUGGUg -3'
miRNA:   3'- gcugCUCGGUCU------------GCUUCUUCUGCUAg -5'
25797 5' -51.4 NC_005337.1 + 93091 0.68 0.969748
Target:  5'- aCGACGGGCUccuccgcggcaucaaGGACcugccccuGGAGACGGUCc -3'
miRNA:   3'- -GCUGCUCGG---------------UCUGcuu-----CUUCUGCUAG- -5'
25797 5' -51.4 NC_005337.1 + 35340 0.68 0.968514
Target:  5'- aGGCGuGCguGGCGccGAAGugGAg- -3'
miRNA:   3'- gCUGCuCGguCUGCuuCUUCugCUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.