miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
258 5' -57.9 AC_000008.1 + 23861 0.66 0.440116
Target:  5'- cGCCGCCuCAuccgcuuuuuuGGGGGCGcccggGGAGGCGg- -3'
miRNA:   3'- -UGGCGGuGU-----------CUCCCGUa----CCUCUGUgu -5'
258 5' -57.9 AC_000008.1 + 13371 0.66 0.414689
Target:  5'- aGCUGCCGCGGAuGGUugugccugaguuuaaGUGGAG-CACu -3'
miRNA:   3'- -UGGCGGUGUCUcCCG---------------UACCUCuGUGu -5'
258 5' -57.9 AC_000008.1 + 10260 0.66 0.410858
Target:  5'- gGCCccaaaGCgGCGGAGGGCAUucgcGGuacuuaauGGGCACAa -3'
miRNA:   3'- -UGG-----CGgUGUCUCCCGUA----CC--------UCUGUGU- -5'
258 5' -57.9 AC_000008.1 + 12432 0.67 0.364878
Target:  5'- -gCGUgGgAGaAGGGCAUGGAGGCuGCGc -3'
miRNA:   3'- ugGCGgUgUC-UCCCGUACCUCUG-UGU- -5'
258 5' -57.9 AC_000008.1 + 8624 0.68 0.306714
Target:  5'- cCCGCCGggagAGGGGGCA-GG-GGCACGu -3'
miRNA:   3'- uGGCGGUg---UCUCCCGUaCCuCUGUGU- -5'
258 5' -57.9 AC_000008.1 + 9512 0.68 0.306714
Target:  5'- gGCCGUucuCGCGGGGGcGCAguUGGaAGACGCc -3'
miRNA:   3'- -UGGCG---GUGUCUCC-CGU--ACC-UCUGUGu -5'
258 5' -57.9 AC_000008.1 + 24819 0.69 0.276794
Target:  5'- uGCCGCUGCuGAGGag--GGGGGCGCAu -3'
miRNA:   3'- -UGGCGGUGuCUCCcguaCCUCUGUGU- -5'
258 5' -57.9 AC_000008.1 + 13148 0.7 0.24925
Target:  5'- aGCCGCgCGCuG-GGGCA-GGAGgACACGg -3'
miRNA:   3'- -UGGCG-GUGuCuCCCGUaCCUC-UGUGU- -5'
258 5' -57.9 AC_000008.1 + 15061 0.7 0.218049
Target:  5'- aGCCGCCcaguuGCgGGAGGGgAUGGAuaugGGCACGu -3'
miRNA:   3'- -UGGCGG-----UG-UCUCCCgUACCU----CUGUGU- -5'
258 5' -57.9 AC_000008.1 + 30423 0.71 0.206533
Target:  5'- -aCGCCGCGGAGGGgcUGGAcuauGACACc -3'
miRNA:   3'- ugGCGGUGUCUCCCguACCU----CUGUGu -5'
258 5' -57.9 AC_000008.1 + 17213 1.08 0.000319
Target:  5'- cACCGCCACAGAGGGCAUGGAGACACAa -3'
miRNA:   3'- -UGGCGGUGUCUCCCGUACCUCUGUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.