miRNA display CGI


Results 1 - 20 of 59 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25816 3' -54 NC_005337.1 + 82952 0.66 0.959014
Target:  5'- gUCGGaGAGCGGcGUGGACuGGUAgUCGGc -3'
miRNA:   3'- -AGUUcCUUGCC-CACUUGuCCGU-GGCC- -5'
25816 3' -54 NC_005337.1 + 90234 0.66 0.959014
Target:  5'- -aGAGGuacucugucuCGuccGUGGGCAGGUACCGGu -3'
miRNA:   3'- agUUCCuu--------GCc--CACUUGUCCGUGGCC- -5'
25816 3' -54 NC_005337.1 + 730 0.66 0.959014
Target:  5'- gCGGGGuacGCGGGcgaGAGCGcGGCGCCc- -3'
miRNA:   3'- aGUUCCu--UGCCCa--CUUGU-CCGUGGcc -5'
25816 3' -54 NC_005337.1 + 34394 0.66 0.959014
Target:  5'- -aGAGGAGCGuggcGGUGcuccagGGCAGGC-CCGa -3'
miRNA:   3'- agUUCCUUGC----CCAC------UUGUCCGuGGCc -5'
25816 3' -54 NC_005337.1 + 730 0.66 0.959014
Target:  5'- gCGGGGuacGCGGGcgaGAGCGcGGCGCCc- -3'
miRNA:   3'- aGUUCCu--UGCCCa--CUUGU-CCGUGGcc -5'
25816 3' -54 NC_005337.1 + 108901 0.66 0.95521
Target:  5'- gCAGcGAGCGcGUGAGCaaGGGCACCa- -3'
miRNA:   3'- aGUUcCUUGCcCACUUG--UCCGUGGcc -5'
25816 3' -54 NC_005337.1 + 68127 0.66 0.952816
Target:  5'- gUCGcGGGGCcGGUGGccgcgcgcgccccuaGCGGGCGgCGGa -3'
miRNA:   3'- -AGUuCCUUGcCCACU---------------UGUCCGUgGCC- -5'
25816 3' -54 NC_005337.1 + 32901 0.66 0.951174
Target:  5'- uUCGGGcGAuacgaGGGUGAcGCAGGaGCUGGa -3'
miRNA:   3'- -AGUUC-CUug---CCCACU-UGUCCgUGGCC- -5'
25816 3' -54 NC_005337.1 + 46406 0.66 0.951174
Target:  5'- gCGAGGucaccCGGGUGuugGCGauGCACCGGu -3'
miRNA:   3'- aGUUCCuu---GCCCACu--UGUc-CGUGGCC- -5'
25816 3' -54 NC_005337.1 + 1282 0.66 0.946901
Target:  5'- cCGcGGAgGCGGGUcGGCGGGCAgguuguccauCCGGc -3'
miRNA:   3'- aGUuCCU-UGCCCAcUUGUCCGU----------GGCC- -5'
25816 3' -54 NC_005337.1 + 55088 0.66 0.946901
Target:  5'- cCGAGGAGCaGGUGAucCAGcGCGCg-- -3'
miRNA:   3'- aGUUCCUUGcCCACUu-GUC-CGUGgcc -5'
25816 3' -54 NC_005337.1 + 27784 0.67 0.937635
Target:  5'- cCAcGGAguuGCGGGagcaucgcgccuUcagGAACAGGUACCGGc -3'
miRNA:   3'- aGUuCCU---UGCCC------------A---CUUGUCCGUGGCC- -5'
25816 3' -54 NC_005337.1 + 56088 0.67 0.937635
Target:  5'- cCGAGGAGCGcgacguggagaaGGUGcuCgAGGCGCaCGGc -3'
miRNA:   3'- aGUUCCUUGC------------CCACuuG-UCCGUG-GCC- -5'
25816 3' -54 NC_005337.1 + 46561 0.67 0.937635
Target:  5'- uUCGAGGAGCGGcucaucCAGGaguuCGCCGGc -3'
miRNA:   3'- -AGUUCCUUGCCcacuu-GUCC----GUGGCC- -5'
25816 3' -54 NC_005337.1 + 852 0.67 0.937635
Target:  5'- -gAAGGcGGCGGGcagcGCGGGCgcgGCCGGg -3'
miRNA:   3'- agUUCC-UUGCCCacu-UGUCCG---UGGCC- -5'
25816 3' -54 NC_005337.1 + 127782 0.67 0.937635
Target:  5'- ---cGGAGCGcGUGGuGCGGGUGCUGGu -3'
miRNA:   3'- aguuCCUUGCcCACU-UGUCCGUGGCC- -5'
25816 3' -54 NC_005337.1 + 852 0.67 0.937635
Target:  5'- -gAAGGcGGCGGGcagcGCGGGCgcgGCCGGg -3'
miRNA:   3'- agUUCC-UUGCCCacu-UGUCCG---UGGCC- -5'
25816 3' -54 NC_005337.1 + 116319 0.67 0.927395
Target:  5'- cCAuGGAGCGGugcGUGcugcuGCGGGCgcagcGCCGGg -3'
miRNA:   3'- aGUuCCUUGCC---CACu----UGUCCG-----UGGCC- -5'
25816 3' -54 NC_005337.1 + 117827 0.67 0.927395
Target:  5'- cCGGGGAcccggGCgGGGUGcgcacGCAGGCGgUGGg -3'
miRNA:   3'- aGUUCCU-----UG-CCCACu----UGUCCGUgGCC- -5'
25816 3' -54 NC_005337.1 + 97713 0.67 0.921907
Target:  5'- cUCGccGGugGGGUGGcucGCcGGCGCCGc -3'
miRNA:   3'- -AGUucCUugCCCACU---UGuCCGUGGCc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.