miRNA display CGI


Results 1 - 20 of 321 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25816 5' -63.1 NC_005337.1 + 64636 0.66 0.650732
Target:  5'- aGGUGGuAaauggauaagagucuCGCCGugG-CGGugCGGCuCGu -3'
miRNA:   3'- -CCGCC-U---------------GCGGCugCuGCCugGCCG-GC- -5'
25816 5' -63.1 NC_005337.1 + 119690 0.66 0.646889
Target:  5'- uGGCcGGCGCCaucGugGAcCGGAgCCgcgaGGCCGg -3'
miRNA:   3'- -CCGcCUGCGG---CugCU-GCCU-GG----CCGGC- -5'
25816 5' -63.1 NC_005337.1 + 35437 0.66 0.646889
Target:  5'- cGCGcacGGCGCgGugGGCGcGACCGcGaCCGu -3'
miRNA:   3'- cCGC---CUGCGgCugCUGC-CUGGC-C-GGC- -5'
25816 5' -63.1 NC_005337.1 + 923 0.66 0.646889
Target:  5'- cGGCGG-CGgCGGCGaggcggcggagcGCGGACauGCUGg -3'
miRNA:   3'- -CCGCCuGCgGCUGC------------UGCCUGgcCGGC- -5'
25816 5' -63.1 NC_005337.1 + 99506 0.66 0.646889
Target:  5'- cGCGGACuGCCuggugcucugcGACGACGcGGCCcggugcGCCGc -3'
miRNA:   3'- cCGCCUG-CGG-----------CUGCUGC-CUGGc-----CGGC- -5'
25816 5' -63.1 NC_005337.1 + 84891 0.66 0.646889
Target:  5'- -uCGGcCGCgGGgGGCGGugCGGCgGu -3'
miRNA:   3'- ccGCCuGCGgCUgCUGCCugGCCGgC- -5'
25816 5' -63.1 NC_005337.1 + 53785 0.66 0.646889
Target:  5'- uGCGG-CGCaacauguucacCGGCGuggagaucGCGGACCGGUCu -3'
miRNA:   3'- cCGCCuGCG-----------GCUGC--------UGCCUGGCCGGc -5'
25816 5' -63.1 NC_005337.1 + 923 0.66 0.646889
Target:  5'- cGGCGG-CGgCGGCGaggcggcggagcGCGGACauGCUGg -3'
miRNA:   3'- -CCGCCuGCgGCUGC------------UGCCUGgcCGGC- -5'
25816 5' -63.1 NC_005337.1 + 28851 0.66 0.640159
Target:  5'- uGCGGcaguACGCCGuGCugguguccaacaaGACGGAcgugcagacgugcaaCCGGCCGg -3'
miRNA:   3'- cCGCC----UGCGGC-UG-------------CUGCCU---------------GGCCGGC- -5'
25816 5' -63.1 NC_005337.1 + 111191 0.66 0.637274
Target:  5'- -cCGcGCGCaCGAUGcCGGGCaCGGCCGc -3'
miRNA:   3'- ccGCcUGCG-GCUGCuGCCUG-GCCGGC- -5'
25816 5' -63.1 NC_005337.1 + 123495 0.66 0.637274
Target:  5'- gGGaCGGucgucCGCCuGACGAUGG-CCGGUgCGg -3'
miRNA:   3'- -CC-GCCu----GCGG-CUGCUGCCuGGCCG-GC- -5'
25816 5' -63.1 NC_005337.1 + 52578 0.66 0.637274
Target:  5'- cGgGGACGgCG-CGGCGGcGCUGGCgGc -3'
miRNA:   3'- cCgCCUGCgGCuGCUGCC-UGGCCGgC- -5'
25816 5' -63.1 NC_005337.1 + 49164 0.66 0.637274
Target:  5'- cGGCGGGCGUCaagaacgugcaGACGcucguGCGGuACgUGGCCa -3'
miRNA:   3'- -CCGCCUGCGG-----------CUGC-----UGCC-UG-GCCGGc -5'
25816 5' -63.1 NC_005337.1 + 23755 0.66 0.637274
Target:  5'- uGGUGGGCGCCGuguucaccacgcGCGAgcgccacguCGaGCUGGCCc -3'
miRNA:   3'- -CCGCCUGCGGC------------UGCU---------GCcUGGCCGGc -5'
25816 5' -63.1 NC_005337.1 + 61215 0.66 0.637274
Target:  5'- uGGUGcacGACGgUGGCGAUGGACa-GCCGc -3'
miRNA:   3'- -CCGC---CUGCgGCUGCUGCCUGgcCGGC- -5'
25816 5' -63.1 NC_005337.1 + 130605 0.66 0.637274
Target:  5'- gGGCGcGACGCaagaccccCGACugcGCGGACgacgaGGCCGc -3'
miRNA:   3'- -CCGC-CUGCG--------GCUGc--UGCCUGg----CCGGC- -5'
25816 5' -63.1 NC_005337.1 + 110319 0.66 0.637274
Target:  5'- gGGC--GCGCCGuu--CGGcCCGGCCGg -3'
miRNA:   3'- -CCGccUGCGGCugcuGCCuGGCCGGC- -5'
25816 5' -63.1 NC_005337.1 + 121690 0.66 0.637274
Target:  5'- cGCGGGCGCCaACGugaacgcgcGCGGGgaGGCgGa -3'
miRNA:   3'- cCGCCUGCGGcUGC---------UGCCUggCCGgC- -5'
25816 5' -63.1 NC_005337.1 + 98014 0.66 0.636312
Target:  5'- cGGCuGGucGCGCUGGCcaccGACGGGCUGGgguucguCCGg -3'
miRNA:   3'- -CCG-CC--UGCGGCUG----CUGCCUGGCC-------GGC- -5'
25816 5' -63.1 NC_005337.1 + 86604 0.66 0.636312
Target:  5'- cGCGGACGCCcgccagcaugccgGGCGcCGGGCUcGUCa -3'
miRNA:   3'- cCGCCUGCGG-------------CUGCuGCCUGGcCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.