miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25842 5' -57.1 NC_005337.1 + 83260 0.66 0.804554
Target:  5'- ----cGGAGCCUGAcugGCGGCUCGAg-- -3'
miRNA:   3'- aagcaCCUCGGGCU---CGUCGAGUUgaa -5'
25842 5' -57.1 NC_005337.1 + 78455 0.66 0.79534
Target:  5'- -cCGUaGcGCCCGAGCAGgUUCAGCa- -3'
miRNA:   3'- aaGCAcCuCGGGCUCGUC-GAGUUGaa -5'
25842 5' -57.1 NC_005337.1 + 103872 0.66 0.79534
Target:  5'- gUUCGcGGAGCgCG-GCGGcCUCGACa- -3'
miRNA:   3'- -AAGCaCCUCGgGCuCGUC-GAGUUGaa -5'
25842 5' -57.1 NC_005337.1 + 10816 0.66 0.79534
Target:  5'- -gCGUGGAcGCCgCGGGCGGgUCuAGCg- -3'
miRNA:   3'- aaGCACCU-CGG-GCUCGUCgAG-UUGaa -5'
25842 5' -57.1 NC_005337.1 + 18010 0.66 0.78597
Target:  5'- -cCGgcGGAGCCauGGCAGCUCuGCUa -3'
miRNA:   3'- aaGCa-CCUCGGgcUCGUCGAGuUGAa -5'
25842 5' -57.1 NC_005337.1 + 46483 0.66 0.78597
Target:  5'- -gUGUGGguGGCCCGcGCGGC-CGACa- -3'
miRNA:   3'- aaGCACC--UCGGGCuCGUCGaGUUGaa -5'
25842 5' -57.1 NC_005337.1 + 130721 0.66 0.78597
Target:  5'- -gCGUGGAGCUcguCGAGC-GCUCGuggccGCUg -3'
miRNA:   3'- aaGCACCUCGG---GCUCGuCGAGU-----UGAa -5'
25842 5' -57.1 NC_005337.1 + 71932 0.66 0.776454
Target:  5'- -gCGUGGAcCCCGAGguGCgcgagauccccuUCAACa- -3'
miRNA:   3'- aaGCACCUcGGGCUCguCG------------AGUUGaa -5'
25842 5' -57.1 NC_005337.1 + 102409 0.67 0.737122
Target:  5'- aUCGUGGAGCgCGAcGCGGUg-GACa- -3'
miRNA:   3'- aAGCACCUCGgGCU-CGUCGagUUGaa -5'
25842 5' -57.1 NC_005337.1 + 60631 0.67 0.727022
Target:  5'- -aCGUGcucGGGCCCGAGCAGCg------ -3'
miRNA:   3'- aaGCAC---CUCGGGCUCGUCGaguugaa -5'
25842 5' -57.1 NC_005337.1 + 68373 0.67 0.696242
Target:  5'- -gCGUGGAGCgaGGGCGGUgCGACg- -3'
miRNA:   3'- aaGCACCUCGggCUCGUCGaGUUGaa -5'
25842 5' -57.1 NC_005337.1 + 133444 0.67 0.693132
Target:  5'- cUUCGUcGAGCCCGGGCccgcgcgcgcggacGGCUCcGCg- -3'
miRNA:   3'- -AAGCAcCUCGGGCUCG--------------UCGAGuUGaa -5'
25842 5' -57.1 NC_005337.1 + 133444 0.67 0.693132
Target:  5'- cUUCGUcGAGCCCGGGCccgcgcgcgcggacGGCUCcGCg- -3'
miRNA:   3'- -AAGCAcCUCGGGCUCG--------------UCGAGuUGaa -5'
25842 5' -57.1 NC_005337.1 + 115577 0.68 0.685855
Target:  5'- cUCGccGGGGCCCGAGCuGCUgucucCGACc- -3'
miRNA:   3'- aAGCa-CCUCGGGCUCGuCGA-----GUUGaa -5'
25842 5' -57.1 NC_005337.1 + 61071 0.68 0.675422
Target:  5'- aUgGUGuuGAGCCgGuGCAGCUCGGCg- -3'
miRNA:   3'- aAgCAC--CUCGGgCuCGUCGAGUUGaa -5'
25842 5' -57.1 NC_005337.1 + 29346 0.69 0.601848
Target:  5'- -gCGUGGAGUCCaugcgcguGAGCaccggcgagaGGCUCAGCUUc -3'
miRNA:   3'- aaGCACCUCGGG--------CUCG----------UCGAGUUGAA- -5'
25842 5' -57.1 NC_005337.1 + 2421 0.7 0.570503
Target:  5'- -aCGUGGAGCgCGAGCAcgagauGgUCAGCUc -3'
miRNA:   3'- aaGCACCUCGgGCUCGU------CgAGUUGAa -5'
25842 5' -57.1 NC_005337.1 + 122529 0.7 0.550854
Target:  5'- aUCGUGGAGCCCaagguccccuucucGCGGCUguGCUg -3'
miRNA:   3'- aAGCACCUCGGGcu------------CGUCGAguUGAa -5'
25842 5' -57.1 NC_005337.1 + 58830 0.71 0.499271
Target:  5'- aUCGUcGGGcGCgCCGuGCGGCUCAACa- -3'
miRNA:   3'- aAGCA-CCU-CG-GGCuCGUCGAGUUGaa -5'
25842 5' -57.1 NC_005337.1 + 103469 0.71 0.489402
Target:  5'- aUCGUGGAcgUgGAGCAGUUCAGCUUc -3'
miRNA:   3'- aAGCACCUcgGgCUCGUCGAGUUGAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.