miRNA display CGI


Results 1 - 20 of 167 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25843 3' -57.6 NC_005337.1 + 60197 0.66 0.848195
Target:  5'- gCGGGUgcgGCGCGGgGgGgGACGGCUugGg -3'
miRNA:   3'- -GCUCA---CGCGCCaCgUgCUGCUGGugU- -5'
25843 3' -57.6 NC_005337.1 + 19208 0.66 0.848195
Target:  5'- uCGAagGCGCagaagGGgcugaGCACGACGGCCAUg -3'
miRNA:   3'- -GCUcaCGCG-----CCa----CGUGCUGCUGGUGu -5'
25843 3' -57.6 NC_005337.1 + 9733 0.66 0.848195
Target:  5'- gCGAGauaCGCGGU-CACGACGGCgCugGc -3'
miRNA:   3'- -GCUCac-GCGCCAcGUGCUGCUG-GugU- -5'
25843 3' -57.6 NC_005337.1 + 39667 0.66 0.848195
Target:  5'- gGGGcGCGUGGccccggGCACGuACGugCGCu -3'
miRNA:   3'- gCUCaCGCGCCa-----CGUGC-UGCugGUGu -5'
25843 3' -57.6 NC_005337.1 + 47971 0.66 0.848195
Target:  5'- gCGAGUgcgGCGCGGa-CGCGuccaGGCCGCAc -3'
miRNA:   3'- -GCUCA---CGCGCCacGUGCug--CUGGUGU- -5'
25843 3' -57.6 NC_005337.1 + 35042 0.66 0.848195
Target:  5'- gCGAGcGCGUGGUGgacCGCGuCGAaguCCGCGc -3'
miRNA:   3'- -GCUCaCGCGCCAC---GUGCuGCU---GGUGU- -5'
25843 3' -57.6 NC_005337.1 + 128638 0.66 0.848195
Target:  5'- aCGuGgGCGUGGUGCuguucaACuuCGGCCACAa -3'
miRNA:   3'- -GCuCaCGCGCCACG------UGcuGCUGGUGU- -5'
25843 3' -57.6 NC_005337.1 + 133157 0.66 0.848195
Target:  5'- gCGcGUGCuGCGGcUGCuccCGGCGGCgGCGc -3'
miRNA:   3'- -GCuCACG-CGCC-ACGu--GCUGCUGgUGU- -5'
25843 3' -57.6 NC_005337.1 + 133157 0.66 0.848195
Target:  5'- gCGcGUGCuGCGGcUGCuccCGGCGGCgGCGc -3'
miRNA:   3'- -GCuCACG-CGCC-ACGu--GCUGCUGgUGU- -5'
25843 3' -57.6 NC_005337.1 + 61209 0.66 0.847405
Target:  5'- aGAaa--GUGGUGCACGACGguggcgauggacaGCCGCAg -3'
miRNA:   3'- gCUcacgCGCCACGUGCUGC-------------UGGUGU- -5'
25843 3' -57.6 NC_005337.1 + 123893 0.66 0.846613
Target:  5'- cCGAGcaccagcUGCGUGGccgccugguucUGCuaccgcugcggcgGCGACGGCCGCGu -3'
miRNA:   3'- -GCUC-------ACGCGCC-----------ACG-------------UGCUGCUGGUGU- -5'
25843 3' -57.6 NC_005337.1 + 74903 0.66 0.846613
Target:  5'- cCGGGggcgugaugGCGCGGcuggcggccuucGCGCGcGCGGCCGCGc -3'
miRNA:   3'- -GCUCa--------CGCGCCa-----------CGUGC-UGCUGGUGU- -5'
25843 3' -57.6 NC_005337.1 + 120800 0.66 0.840211
Target:  5'- gGAGcgGCGCGaGacgGUcuGCGACGACUGCGa -3'
miRNA:   3'- gCUCa-CGCGC-Ca--CG--UGCUGCUGGUGU- -5'
25843 3' -57.6 NC_005337.1 + 128787 0.66 0.840211
Target:  5'- aCGGGUGCGCGcGaucaUGgGCGgguGCGGCUGCGc -3'
miRNA:   3'- -GCUCACGCGC-C----ACgUGC---UGCUGGUGU- -5'
25843 3' -57.6 NC_005337.1 + 118759 0.66 0.840211
Target:  5'- uCGGGUGCGUGacaUGCuugcugGCGACGcuguCCGCAg -3'
miRNA:   3'- -GCUCACGCGCc--ACG------UGCUGCu---GGUGU- -5'
25843 3' -57.6 NC_005337.1 + 30247 0.66 0.840211
Target:  5'- gCGGGUcaggcgcagGCGCGG-GCA-GGCGGuCCACGg -3'
miRNA:   3'- -GCUCA---------CGCGCCaCGUgCUGCU-GGUGU- -5'
25843 3' -57.6 NC_005337.1 + 69055 0.66 0.840211
Target:  5'- cCGGGUacgaccugGaCGCGGUGCcCGGCGuCCugGc -3'
miRNA:   3'- -GCUCA--------C-GCGCCACGuGCUGCuGGugU- -5'
25843 3' -57.6 NC_005337.1 + 75959 0.66 0.840211
Target:  5'- aCGAGcUGCGCGacucGCGCGGCGcguuCCugGa -3'
miRNA:   3'- -GCUC-ACGCGCca--CGUGCUGCu---GGugU- -5'
25843 3' -57.6 NC_005337.1 + 73490 0.66 0.840211
Target:  5'- ---aUGCgGCGGUu--CGACGACCACAu -3'
miRNA:   3'- gcucACG-CGCCAcguGCUGCUGGUGU- -5'
25843 3' -57.6 NC_005337.1 + 39312 0.66 0.840211
Target:  5'- --cGUG-GCGGUGUACucgaGACGAUCGCu -3'
miRNA:   3'- gcuCACgCGCCACGUG----CUGCUGGUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.