miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25843 5' -52.2 NC_005337.1 + 106773 0.66 0.98044
Target:  5'- gCGCAcgacaucgacccgacGGGUgCUaCCGCGUGGACAcgUCGGc -3'
miRNA:   3'- -GCGU---------------UCCG-GAaGGCGUACUUGU--AGCU- -5'
25843 5' -52.2 NC_005337.1 + 51692 0.66 0.979537
Target:  5'- gGCGAGGCCagucuggcCUGCGacggcgacgcgcUGAugAUCGAg -3'
miRNA:   3'- gCGUUCCGGaa------GGCGU------------ACUugUAGCU- -5'
25843 5' -52.2 NC_005337.1 + 119425 0.66 0.979537
Target:  5'- aGCGAGGUggauagcgCgCGCGaGAACAUCGAg -3'
miRNA:   3'- gCGUUCCGgaa-----G-GCGUaCUUGUAGCU- -5'
25843 5' -52.2 NC_005337.1 + 24602 0.66 0.977143
Target:  5'- aGCucguGGCCUUCgGCGcGGGCA-CGGa -3'
miRNA:   3'- gCGuu--CCGGAAGgCGUaCUUGUaGCU- -5'
25843 5' -52.2 NC_005337.1 + 123009 0.66 0.977143
Target:  5'- gGCgAGGGCCgacacauccCCGC--GGACGUCGAa -3'
miRNA:   3'- gCG-UUCCGGaa-------GGCGuaCUUGUAGCU- -5'
25843 5' -52.2 NC_005337.1 + 70756 0.66 0.97455
Target:  5'- aCGCccGAGGCCUgcaCGUcgGUGAGCA-CGGa -3'
miRNA:   3'- -GCG--UUCCGGAag-GCG--UACUUGUaGCU- -5'
25843 5' -52.2 NC_005337.1 + 73276 0.66 0.97455
Target:  5'- cCGCGAGGaggcCCGCA---GCAUCGAg -3'
miRNA:   3'- -GCGUUCCggaaGGCGUacuUGUAGCU- -5'
25843 5' -52.2 NC_005337.1 + 61905 0.66 0.97455
Target:  5'- cCGCGAcGGCCgUCCGCGcGAucGCG-CGGa -3'
miRNA:   3'- -GCGUU-CCGGaAGGCGUaCU--UGUaGCU- -5'
25843 5' -52.2 NC_005337.1 + 73597 0.66 0.97455
Target:  5'- gGCAAGuGCCUccucuUCCGgCAcgagcgGGACAUCGu -3'
miRNA:   3'- gCGUUC-CGGA-----AGGC-GUa-----CUUGUAGCu -5'
25843 5' -52.2 NC_005337.1 + 35559 0.66 0.971749
Target:  5'- gCGCAGGGCg--CCGCGcGAGCGgaugccuagCGAg -3'
miRNA:   3'- -GCGUUCCGgaaGGCGUaCUUGUa--------GCU- -5'
25843 5' -52.2 NC_005337.1 + 53727 0.66 0.971749
Target:  5'- gCGCAucGCCcUCUGCcggGUGGACAUCu- -3'
miRNA:   3'- -GCGUucCGGaAGGCG---UACUUGUAGcu -5'
25843 5' -52.2 NC_005337.1 + 33259 0.66 0.968733
Target:  5'- uGCAGGauggaGCuCUUCCcgcGCGUGGAgAUCGAg -3'
miRNA:   3'- gCGUUC-----CG-GAAGG---CGUACUUgUAGCU- -5'
25843 5' -52.2 NC_005337.1 + 92515 0.67 0.965495
Target:  5'- uGCAAGaGCCUgcgcggCCGCcccAUGGACG-CGGu -3'
miRNA:   3'- gCGUUC-CGGAa-----GGCG---UACUUGUaGCU- -5'
25843 5' -52.2 NC_005337.1 + 64774 0.67 0.965495
Target:  5'- gGCGAGGCgUUCC---UGGACuUCGAg -3'
miRNA:   3'- gCGUUCCGgAAGGcguACUUGuAGCU- -5'
25843 5' -52.2 NC_005337.1 + 70961 0.67 0.965495
Target:  5'- aGCAAGcGCCUgCUGCAcucggugcUGAgcgggcucuACAUCGAg -3'
miRNA:   3'- gCGUUC-CGGAaGGCGU--------ACU---------UGUAGCU- -5'
25843 5' -52.2 NC_005337.1 + 35332 0.67 0.962028
Target:  5'- -uCGGGGCCUgggCCGUguucgGUGAGuCGUCGGa -3'
miRNA:   3'- gcGUUCCGGAa--GGCG-----UACUU-GUAGCU- -5'
25843 5' -52.2 NC_005337.1 + 119346 0.67 0.962028
Target:  5'- gCGCAAGGCCUggcUCCccaGCGgcAGCAUCc- -3'
miRNA:   3'- -GCGUUCCGGA---AGG---CGUacUUGUAGcu -5'
25843 5' -52.2 NC_005337.1 + 99136 0.67 0.962028
Target:  5'- aCGCGAuccuGGCCgagugcgCCGCAcUGGGCGUCc- -3'
miRNA:   3'- -GCGUU----CCGGaa-----GGCGU-ACUUGUAGcu -5'
25843 5' -52.2 NC_005337.1 + 126246 0.67 0.962028
Target:  5'- cCGCAAGGCCguggacCUGC-UGAGCGacgccgCGAu -3'
miRNA:   3'- -GCGUUCCGGaa----GGCGuACUUGUa-----GCU- -5'
25843 5' -52.2 NC_005337.1 + 48003 0.67 0.962028
Target:  5'- uGCGuGGCCUggaUCCGCGcgcugcgGAGCA-CGAa -3'
miRNA:   3'- gCGUuCCGGA---AGGCGUa------CUUGUaGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.