miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25843 5' -52.2 NC_005337.1 + 39187 0.67 0.958326
Target:  5'- gGCAAGGCCgucgCCGCGggcuACG-CGGa -3'
miRNA:   3'- gCGUUCCGGaa--GGCGUacu-UGUaGCU- -5'
25843 5' -52.2 NC_005337.1 + 30237 0.67 0.958326
Target:  5'- gCGCGAGGagaCgUUCCGCGcGAugGCGUCGc -3'
miRNA:   3'- -GCGUUCCg--G-AAGGCGUaCU--UGUAGCu -5'
25843 5' -52.2 NC_005337.1 + 65992 0.67 0.954384
Target:  5'- uGCGAGGCCgugcgUCC-CGUGGGCGa--- -3'
miRNA:   3'- gCGUUCCGGa----AGGcGUACUUGUagcu -5'
25843 5' -52.2 NC_005337.1 + 49255 0.67 0.950197
Target:  5'- cCGCGAGGgCU--CGCugGUGGACAUCGu -3'
miRNA:   3'- -GCGUUCCgGAagGCG--UACUUGUAGCu -5'
25843 5' -52.2 NC_005337.1 + 84633 0.68 0.947566
Target:  5'- aCGCucacgGAGGUCUccaucagcgacaacgUCCGCGUGAucugguCGUCGGa -3'
miRNA:   3'- -GCG-----UUCCGGA---------------AGGCGUACUu-----GUAGCU- -5'
25843 5' -52.2 NC_005337.1 + 18094 0.68 0.945761
Target:  5'- aGCGuGGUgUUCCGCAUGcACAccuuggaggacUCGAu -3'
miRNA:   3'- gCGUuCCGgAAGGCGUACuUGU-----------AGCU- -5'
25843 5' -52.2 NC_005337.1 + 105860 0.68 0.941074
Target:  5'- aCGCu-GGCCaUCCGCGacgaGGACAUCu- -3'
miRNA:   3'- -GCGuuCCGGaAGGCGUa---CUUGUAGcu -5'
25843 5' -52.2 NC_005337.1 + 106598 0.68 0.936133
Target:  5'- gCGCGaccugGGGCCcaugUCCGUAgUGAGUAUCGAc -3'
miRNA:   3'- -GCGU-----UCCGGa---AGGCGU-ACUUGUAGCU- -5'
25843 5' -52.2 NC_005337.1 + 109545 0.68 0.936133
Target:  5'- gCGCGAGGaUCUUCaGCAUGcACAgCGAg -3'
miRNA:   3'- -GCGUUCC-GGAAGgCGUACuUGUaGCU- -5'
25843 5' -52.2 NC_005337.1 + 28810 0.68 0.936133
Target:  5'- cCGCGAGGCCgggaaGCAccUGGagcaccACAUCGAg -3'
miRNA:   3'- -GCGUUCCGGaagg-CGU--ACU------UGUAGCU- -5'
25843 5' -52.2 NC_005337.1 + 56159 0.68 0.930935
Target:  5'- gGCAAGGCCgacgCCGUAguccUGGACcUCa- -3'
miRNA:   3'- gCGUUCCGGaa--GGCGU----ACUUGuAGcu -5'
25843 5' -52.2 NC_005337.1 + 79292 0.68 0.930935
Target:  5'- aGCugauGGCCggCCGgAUGAGCAgcggCGGg -3'
miRNA:   3'- gCGuu--CCGGaaGGCgUACUUGUa---GCU- -5'
25843 5' -52.2 NC_005337.1 + 42581 0.68 0.919768
Target:  5'- cCGCGGGGCUcUCCGUGaaGGCGUCGc -3'
miRNA:   3'- -GCGUUCCGGaAGGCGUacUUGUAGCu -5'
25843 5' -52.2 NC_005337.1 + 19283 0.69 0.9138
Target:  5'- gGCGAGcGCCguguUCCaCAUGAacguaGCGUCGAa -3'
miRNA:   3'- gCGUUC-CGGa---AGGcGUACU-----UGUAGCU- -5'
25843 5' -52.2 NC_005337.1 + 24674 0.69 0.912576
Target:  5'- -cCGAGGCCUUCCGCcgcgaguacgaGAACGUgCGGa -3'
miRNA:   3'- gcGUUCCGGAAGGCGua---------CUUGUA-GCU- -5'
25843 5' -52.2 NC_005337.1 + 58255 0.69 0.907577
Target:  5'- gCGCGGcGGUCUUCCGCGUGuaccggcGCA-CGGc -3'
miRNA:   3'- -GCGUU-CCGGAAGGCGUACu------UGUaGCU- -5'
25843 5' -52.2 NC_005337.1 + 119715 0.69 0.907577
Target:  5'- cCGCGAGGCCggaUCGCAcgagGAACucgCGGa -3'
miRNA:   3'- -GCGUUCCGGaa-GGCGUa---CUUGua-GCU- -5'
25843 5' -52.2 NC_005337.1 + 117343 0.69 0.907577
Target:  5'- gGCGAcGGCCaacgucggCCGCGUGGACGUgCGc -3'
miRNA:   3'- gCGUU-CCGGaa------GGCGUACUUGUA-GCu -5'
25843 5' -52.2 NC_005337.1 + 99301 0.69 0.9011
Target:  5'- gGCGcGGCgUUCCGCAgcgccgGGuCGUCGAc -3'
miRNA:   3'- gCGUuCCGgAAGGCGUa-----CUuGUAGCU- -5'
25843 5' -52.2 NC_005337.1 + 3870 0.69 0.9011
Target:  5'- gGCAccGGCCg--CGCAUGAGCGUCu- -3'
miRNA:   3'- gCGUu-CCGGaagGCGUACUUGUAGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.