miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25849 3' -52.8 NC_005337.1 + 126546 0.66 0.973707
Target:  5'- ------gGAUCCGgcuaCCGGCUCAC-CGGu -3'
miRNA:   3'- gaauacaCUAGGC----GGCCGAGUGuGCU- -5'
25849 3' -52.8 NC_005337.1 + 43169 0.66 0.973707
Target:  5'- ----cGUGAUCaGCCGGUaCACGCc- -3'
miRNA:   3'- gaauaCACUAGgCGGCCGaGUGUGcu -5'
25849 3' -52.8 NC_005337.1 + 69386 0.66 0.973432
Target:  5'- ------aGGUCCGCCucugugaGGCggCACGCGAu -3'
miRNA:   3'- gaauacaCUAGGCGG-------CCGa-GUGUGCU- -5'
25849 3' -52.8 NC_005337.1 + 81477 0.66 0.970568
Target:  5'- ------aGGUCCGCCGuggugggcuccguGUUCACGCGGu -3'
miRNA:   3'- gaauacaCUAGGCGGC-------------CGAGUGUGCU- -5'
25849 3' -52.8 NC_005337.1 + 17573 0.66 0.967807
Target:  5'- gCUUGUGccGcgCCauugcgGCCGGCUCGCccGCGGg -3'
miRNA:   3'- -GAAUACa-CuaGG------CGGCCGAGUG--UGCU- -5'
25849 3' -52.8 NC_005337.1 + 74208 0.66 0.961025
Target:  5'- --cGUGUucUCCGCCGuGCUUGCgGCGGa -3'
miRNA:   3'- gaaUACAcuAGGCGGC-CGAGUG-UGCU- -5'
25849 3' -52.8 NC_005337.1 + 10321 0.67 0.957288
Target:  5'- -cUAUGUGcagCgCGaCCGGCUCGCGgGGc -3'
miRNA:   3'- gaAUACACua-G-GC-GGCCGAGUGUgCU- -5'
25849 3' -52.8 NC_005337.1 + 96850 0.67 0.953313
Target:  5'- ----cGUGGcguUCCcCCGGCUC-CGCGAc -3'
miRNA:   3'- gaauaCACU---AGGcGGCCGAGuGUGCU- -5'
25849 3' -52.8 NC_005337.1 + 17016 0.67 0.953313
Target:  5'- -gUcgG-GGUCUGCgGGC-CGCGCGAa -3'
miRNA:   3'- gaAuaCaCUAGGCGgCCGaGUGUGCU- -5'
25849 3' -52.8 NC_005337.1 + 133687 0.67 0.949096
Target:  5'- ----cGUGGcgUUCGCCGGCggcuucCGCGCGGc -3'
miRNA:   3'- gaauaCACU--AGGCGGCCGa-----GUGUGCU- -5'
25849 3' -52.8 NC_005337.1 + 133687 0.67 0.949096
Target:  5'- ----cGUGGcgUUCGCCGGCggcuucCGCGCGGc -3'
miRNA:   3'- gaauaCACU--AGGCGGCCGa-----GUGUGCU- -5'
25849 3' -52.8 NC_005337.1 + 90545 0.68 0.929748
Target:  5'- ----gGUGAUCacggucuggCGCCGGCUgccgUACACGGa -3'
miRNA:   3'- gaauaCACUAG---------GCGGCCGA----GUGUGCU- -5'
25849 3' -52.8 NC_005337.1 + 109759 0.69 0.886219
Target:  5'- --------cUCCGCCGGCUUggGCACGGg -3'
miRNA:   3'- gaauacacuAGGCGGCCGAG--UGUGCU- -5'
25849 3' -52.8 NC_005337.1 + 30399 0.7 0.847966
Target:  5'- --gAUGUcGAggCCGCCGcGCUC-CGCGAa -3'
miRNA:   3'- gaaUACA-CUa-GGCGGC-CGAGuGUGCU- -5'
25849 3' -52.8 NC_005337.1 + 128751 0.7 0.831167
Target:  5'- ----cGUGAcagagcUCCGCCGGC--GCGCGAa -3'
miRNA:   3'- gaauaCACU------AGGCGGCCGagUGUGCU- -5'
25849 3' -52.8 NC_005337.1 + 99541 0.76 0.519267
Target:  5'- ----gGUGcgCCGCCGacuGCUCGCGCGAg -3'
miRNA:   3'- gaauaCACuaGGCGGC---CGAGUGUGCU- -5'
25849 3' -52.8 NC_005337.1 + 59379 1.09 0.005165
Target:  5'- uCUUAUGUGAUCCGCCGGCUCACACGAu -3'
miRNA:   3'- -GAAUACACUAGGCGGCCGAGUGUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.