miRNA display CGI


Results 1 - 20 of 222 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25849 5' -57.2 NC_005337.1 + 13009 0.66 0.846299
Target:  5'- uCguGCAgGCCUGCGACG-ACUACu- -3'
miRNA:   3'- uGguCGUaCGGGCGCUGCuUGGUGuc -5'
25849 5' -57.2 NC_005337.1 + 81478 0.66 0.846299
Target:  5'- uCUAGCGUGacggaguaCGCGGCGuACCACGa -3'
miRNA:   3'- uGGUCGUACgg------GCGCUGCuUGGUGUc -5'
25849 5' -57.2 NC_005337.1 + 42611 0.66 0.846299
Target:  5'- uGCUAGC--GCCCGCcauguGCGGcACCGCGGu -3'
miRNA:   3'- -UGGUCGuaCGGGCGc----UGCU-UGGUGUC- -5'
25849 5' -57.2 NC_005337.1 + 69101 0.66 0.846299
Target:  5'- uACCucgugguGCAccucGUCUGCgGGCGAGCCGCGGu -3'
miRNA:   3'- -UGGu------CGUa---CGGGCG-CUGCUUGGUGUC- -5'
25849 5' -57.2 NC_005337.1 + 6043 0.66 0.846299
Target:  5'- cGCgGGCGUggauguccgcGCCCGCGgccACGAGCgGCGc -3'
miRNA:   3'- -UGgUCGUA----------CGGGCGC---UGCUUGgUGUc -5'
25849 5' -57.2 NC_005337.1 + 39475 0.66 0.846299
Target:  5'- cGCCucCGUGCCgCGCGACGcGCgCGCGc -3'
miRNA:   3'- -UGGucGUACGG-GCGCUGCuUG-GUGUc -5'
25849 5' -57.2 NC_005337.1 + 106018 0.66 0.846299
Target:  5'- cACCAcGCAcGUgCGCGugGuGCCGCGc -3'
miRNA:   3'- -UGGU-CGUaCGgGCGCugCuUGGUGUc -5'
25849 5' -57.2 NC_005337.1 + 55730 0.66 0.846299
Target:  5'- cGCaCGGCGcGCCCGUGuACGGGuCCAucCAGg -3'
miRNA:   3'- -UG-GUCGUaCGGGCGC-UGCUU-GGU--GUC- -5'
25849 5' -57.2 NC_005337.1 + 57945 0.66 0.846299
Target:  5'- gGCCAGCcUGCuCUGCGcgggauACGAGCC-CGa -3'
miRNA:   3'- -UGGUCGuACG-GGCGC------UGCUUGGuGUc -5'
25849 5' -57.2 NC_005337.1 + 120861 0.66 0.846299
Target:  5'- cGCUGGCGUGUCCGCcGGUGuGCUACAu -3'
miRNA:   3'- -UGGUCGUACGGGCG-CUGCuUGGUGUc -5'
25849 5' -57.2 NC_005337.1 + 111328 0.66 0.846299
Target:  5'- cCCAGCGUGCCCaGCuuGGCGu-CCAgGa -3'
miRNA:   3'- uGGUCGUACGGG-CG--CUGCuuGGUgUc -5'
25849 5' -57.2 NC_005337.1 + 80170 0.66 0.838161
Target:  5'- uACgGGcCGUGCCgGCGcGCGGacgcgcuccuGCCGCGGg -3'
miRNA:   3'- -UGgUC-GUACGGgCGC-UGCU----------UGGUGUC- -5'
25849 5' -57.2 NC_005337.1 + 72437 0.66 0.838161
Target:  5'- gUgAGCGUGCuCCGCGACGuGCUcaAGg -3'
miRNA:   3'- uGgUCGUACG-GGCGCUGCuUGGugUC- -5'
25849 5' -57.2 NC_005337.1 + 29159 0.66 0.838161
Target:  5'- uAUUAGCA-GCCuaaaaCGCGGCGccgcgcGACCGCAGa -3'
miRNA:   3'- -UGGUCGUaCGG-----GCGCUGC------UUGGUGUC- -5'
25849 5' -57.2 NC_005337.1 + 5551 0.66 0.838161
Target:  5'- uCCAGCAgcgGCUCGCGguacacgcGCGccAGCCGCGu -3'
miRNA:   3'- uGGUCGUa--CGGGCGC--------UGC--UUGGUGUc -5'
25849 5' -57.2 NC_005337.1 + 72257 0.66 0.838161
Target:  5'- cGCCAug--GCCCaCGACGAGCgGCGGc -3'
miRNA:   3'- -UGGUcguaCGGGcGCUGCUUGgUGUC- -5'
25849 5' -57.2 NC_005337.1 + 70013 0.66 0.838161
Target:  5'- uCCGGCGcGCCCGgGucccaGAGCCGCc- -3'
miRNA:   3'- uGGUCGUaCGGGCgCug---CUUGGUGuc -5'
25849 5' -57.2 NC_005337.1 + 4191 0.66 0.838161
Target:  5'- cCCGGCcucaacgGCCUGCGucaGCGAcgcgGCCACAa -3'
miRNA:   3'- uGGUCGua-----CGGGCGC---UGCU----UGGUGUc -5'
25849 5' -57.2 NC_005337.1 + 77007 0.66 0.837337
Target:  5'- cGCCGGCcccgcgcggccccGUGCCCgaaccaGCGcCGGugCACGGc -3'
miRNA:   3'- -UGGUCG-------------UACGGG------CGCuGCUugGUGUC- -5'
25849 5' -57.2 NC_005337.1 + 54112 0.66 0.835682
Target:  5'- cGCCGGCAcgGCCCGUaccagcaguaguacGG-GAGCCGCGu -3'
miRNA:   3'- -UGGUCGUa-CGGGCG--------------CUgCUUGGUGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.