miRNA display CGI


Results 1 - 11 of 11 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25866 3' -52.3 NC_005337.1 + 81466 0.66 0.967595
Target:  5'- aGUCgcgCAGCAGGUccgccguGGUGGGCuccGUGu -3'
miRNA:   3'- gCAGaa-GUCGUUCG-------CCAUCCGu--CAUu -5'
25866 3' -52.3 NC_005337.1 + 86015 0.66 0.96457
Target:  5'- gCGUag-CAGC-AGCGG-AGGCGGUc- -3'
miRNA:   3'- -GCAgaaGUCGuUCGCCaUCCGUCAuu -5'
25866 3' -52.3 NC_005337.1 + 10719 0.66 0.957151
Target:  5'- gCGUCcaCGGCcauGUGGUcaGGGCGGUGGg -3'
miRNA:   3'- -GCAGaaGUCGuu-CGCCA--UCCGUCAUU- -5'
25866 3' -52.3 NC_005337.1 + 109553 0.66 0.95307
Target:  5'- -aUCUUCAGCAugcacagcgAGCGGUAG-CAGc-- -3'
miRNA:   3'- gcAGAAGUCGU---------UCGCCAUCcGUCauu -5'
25866 3' -52.3 NC_005337.1 + 71318 0.67 0.944144
Target:  5'- uCGUCggCGGCGAcccGCGcGgcGGCGGUGc -3'
miRNA:   3'- -GCAGaaGUCGUU---CGC-CauCCGUCAUu -5'
25866 3' -52.3 NC_005337.1 + 37941 0.67 0.934176
Target:  5'- aGUCcagCAGCGccgccAGCGGgAGGCAGg-- -3'
miRNA:   3'- gCAGaa-GUCGU-----UCGCCaUCCGUCauu -5'
25866 3' -52.3 NC_005337.1 + 35358 0.69 0.890978
Target:  5'- uCGUCggaCGGCuGGCGGgcGGaCGGUGAc -3'
miRNA:   3'- -GCAGaa-GUCGuUCGCCauCC-GUCAUU- -5'
25866 3' -52.3 NC_005337.1 + 19683 0.69 0.886685
Target:  5'- uCGUCUugcagacugaccucaUCGuguGCGGGCGG-GGGCGGUAAg -3'
miRNA:   3'- -GCAGA---------------AGU---CGUUCGCCaUCCGUCAUU- -5'
25866 3' -52.3 NC_005337.1 + 98971 0.7 0.817766
Target:  5'- cCGUCUUCGacuccGCGAGCGGggccgAGGUGGa-- -3'
miRNA:   3'- -GCAGAAGU-----CGUUCGCCa----UCCGUCauu -5'
25866 3' -52.3 NC_005337.1 + 66627 0.7 0.817766
Target:  5'- aCGcCUUUcgGGCGGGCGGUGGG-AGUGGu -3'
miRNA:   3'- -GCaGAAG--UCGUUCGCCAUCCgUCAUU- -5'
25866 3' -52.3 NC_005337.1 + 67606 1.07 0.005768
Target:  5'- aCGUCUUCAGCAAGCGGUAGGCAGUAAg -3'
miRNA:   3'- -GCAGAAGUCGUUCGCCAUCCGUCAUU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.