miRNA display CGI


Results 1 - 20 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25866 5' -60.3 NC_005337.1 + 106838 0.66 0.728205
Target:  5'- aACUGCUUCCACUGCgaCGaCCCGGGc- -3'
miRNA:   3'- gUGGUGAGGGUGGCGg-GC-GGGCUUuc -5'
25866 5' -60.3 NC_005337.1 + 108971 0.66 0.728205
Target:  5'- gCGCCGgUCgacgCGCgGCCCGCCCGc--- -3'
miRNA:   3'- -GUGGUgAGg---GUGgCGGGCGGGCuuuc -5'
25866 5' -60.3 NC_005337.1 + 43622 0.66 0.728205
Target:  5'- aGCCGCUCCgagaucagCGCCGCC-GCgCGAucAAGg -3'
miRNA:   3'- gUGGUGAGG--------GUGGCGGgCGgGCU--UUC- -5'
25866 5' -60.3 NC_005337.1 + 57015 0.66 0.728205
Target:  5'- aCACgUACUCCCGCCGgCUggaCGUCCGGc-- -3'
miRNA:   3'- -GUG-GUGAGGGUGGC-GG---GCGGGCUuuc -5'
25866 5' -60.3 NC_005337.1 + 1772 0.66 0.728205
Target:  5'- gGCgGCaUCCCGCCGgCCGCCa----- -3'
miRNA:   3'- gUGgUG-AGGGUGGCgGGCGGgcuuuc -5'
25866 5' -60.3 NC_005337.1 + 117633 0.66 0.728205
Target:  5'- cCGCCGCg-UCACCGCCgugguggagCGCUCGAAGa -3'
miRNA:   3'- -GUGGUGagGGUGGCGG---------GCGGGCUUUc -5'
25866 5' -60.3 NC_005337.1 + 101077 0.66 0.728205
Target:  5'- gGCgCGC-CCCGCCgucgggaggGCCCGUCCGGcgcGGGg -3'
miRNA:   3'- gUG-GUGaGGGUGG---------CGGGCGGGCU---UUC- -5'
25866 5' -60.3 NC_005337.1 + 4400 0.66 0.728205
Target:  5'- cCACCGCUaCCACCGUacaUGCCUGcGAa -3'
miRNA:   3'- -GUGGUGAgGGUGGCGg--GCGGGCuUUc -5'
25866 5' -60.3 NC_005337.1 + 91488 0.66 0.71854
Target:  5'- cCGCCACgaaggUCaCGCUG-CCGCCCGAGc- -3'
miRNA:   3'- -GUGGUGa----GG-GUGGCgGGCGGGCUUuc -5'
25866 5' -60.3 NC_005337.1 + 102751 0.66 0.71854
Target:  5'- aACUACcagCCCACCaUCCaCCCGGAGGu -3'
miRNA:   3'- gUGGUGa--GGGUGGcGGGcGGGCUUUC- -5'
25866 5' -60.3 NC_005337.1 + 97398 0.66 0.71854
Target:  5'- aUACC-CUCCUGCCGCCggaGCCaGAAc- -3'
miRNA:   3'- -GUGGuGAGGGUGGCGGg--CGGgCUUuc -5'
25866 5' -60.3 NC_005337.1 + 109429 0.66 0.71854
Target:  5'- gACCACgUCCUcgaGCaCGCgCCGCUCGAGc- -3'
miRNA:   3'- gUGGUG-AGGG---UG-GCG-GGCGGGCUUuc -5'
25866 5' -60.3 NC_005337.1 + 122689 0.66 0.71854
Target:  5'- uGCCcCUgCUCGCUG-CCGCCCGAGGu -3'
miRNA:   3'- gUGGuGA-GGGUGGCgGGCGGGCUUUc -5'
25866 5' -60.3 NC_005337.1 + 40046 0.66 0.71854
Target:  5'- gACCGacaucgagCUCACCGCCCGCuaguguCCGAAc- -3'
miRNA:   3'- gUGGUga------GGGUGGCGGGCG------GGCUUuc -5'
25866 5' -60.3 NC_005337.1 + 40276 0.66 0.71854
Target:  5'- gGCC--UUCCACCGUcuggugaccuccUCGCCCGAGGGc -3'
miRNA:   3'- gUGGugAGGGUGGCG------------GGCGGGCUUUC- -5'
25866 5' -60.3 NC_005337.1 + 68683 0.66 0.71854
Target:  5'- aGCgCGCUcuuggCCUGCgCGCCCGaCCCGAGGa -3'
miRNA:   3'- gUG-GUGA-----GGGUG-GCGGGC-GGGCUUUc -5'
25866 5' -60.3 NC_005337.1 + 13743 0.66 0.71854
Target:  5'- uCACCAUgaacauggUCCCGCgGUCCauggugcagcGCCCGAAc- -3'
miRNA:   3'- -GUGGUG--------AGGGUGgCGGG----------CGGGCUUuc -5'
25866 5' -60.3 NC_005337.1 + 131880 0.66 0.71757
Target:  5'- gACCGCUUCCGCCuGCgCGugucgucgacgcaCCCGAuAGa -3'
miRNA:   3'- gUGGUGAGGGUGG-CGgGC-------------GGGCUuUC- -5'
25866 5' -60.3 NC_005337.1 + 54850 0.66 0.712707
Target:  5'- gCACgCGCgCCCggcguucaucgagauGCCGCgCCGCCgCGGGAGc -3'
miRNA:   3'- -GUG-GUGaGGG---------------UGGCG-GGCGG-GCUUUC- -5'
25866 5' -60.3 NC_005337.1 + 51534 0.66 0.708805
Target:  5'- cCACCAUcgcacaCUCGCUGCuCCGCUCGGAGc -3'
miRNA:   3'- -GUGGUGa-----GGGUGGCG-GGCGGGCUUUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.