miRNA display CGI


Results 1 - 20 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25866 5' -60.3 NC_005337.1 + 67642 1.08 0.00117
Target:  5'- gCACCACUCCCACCGCCCGCCCGAAAGg -3'
miRNA:   3'- -GUGGUGAGGGUGGCGGGCGGGCUUUC- -5'
25866 5' -60.3 NC_005337.1 + 133227 0.8 0.11814
Target:  5'- cCGCCGgcCUCCCGCCGCCCGCCUc---- -3'
miRNA:   3'- -GUGGU--GAGGGUGGCGGGCGGGcuuuc -5'
25866 5' -60.3 NC_005337.1 + 133227 0.8 0.11814
Target:  5'- cCGCCGgcCUCCCGCCGCCCGCCUc---- -3'
miRNA:   3'- -GUGGU--GAGGGUGGCGGGCGGGcuuuc -5'
25866 5' -60.3 NC_005337.1 + 92421 0.78 0.148346
Target:  5'- aCGCCACgagCCCGCU-CCCGCCCGAcGAGg -3'
miRNA:   3'- -GUGGUGa--GGGUGGcGGGCGGGCU-UUC- -5'
25866 5' -60.3 NC_005337.1 + 50334 0.77 0.190017
Target:  5'- gACCGCccgguaCCCGCCGCCCGgCCGAGc- -3'
miRNA:   3'- gUGGUGa-----GGGUGGCGGGCgGGCUUuc -5'
25866 5' -60.3 NC_005337.1 + 5785 0.76 0.1995
Target:  5'- aCACCACUCgCCgACCGCCCGCagggaCGAu-- -3'
miRNA:   3'- -GUGGUGAG-GG-UGGCGGGCGg----GCUuuc -5'
25866 5' -60.3 NC_005337.1 + 127220 0.75 0.225021
Target:  5'- aCGCgCGCaacCCCGCCGCCCGcCCCGAc-- -3'
miRNA:   3'- -GUG-GUGa--GGGUGGCGGGC-GGGCUuuc -5'
25866 5' -60.3 NC_005337.1 + 115419 0.75 0.247388
Target:  5'- aCGCCG-UCUCGCCGgCCGUCCGGGAGu -3'
miRNA:   3'- -GUGGUgAGGGUGGCgGGCGGGCUUUC- -5'
25866 5' -60.3 NC_005337.1 + 73999 0.74 0.265347
Target:  5'- -cCCACUCCCACCcccgcGCCUGcCCCGAc-- -3'
miRNA:   3'- guGGUGAGGGUGG-----CGGGC-GGGCUuuc -5'
25866 5' -60.3 NC_005337.1 + 29979 0.74 0.290917
Target:  5'- cCGCCGCgCCCucgcggACCGCCCGCgCGAAc- -3'
miRNA:   3'- -GUGGUGaGGG------UGGCGGGCGgGCUUuc -5'
25866 5' -60.3 NC_005337.1 + 103516 0.73 0.318376
Target:  5'- gCAgCGCUUCCGCaCGCugCCGCCCGAGGa -3'
miRNA:   3'- -GUgGUGAGGGUG-GCG--GGCGGGCUUUc -5'
25866 5' -60.3 NC_005337.1 + 66541 0.72 0.347739
Target:  5'- gCugCGCgCCgCGCCGCCgGuCCCGGAGGa -3'
miRNA:   3'- -GugGUGaGG-GUGGCGGgC-GGGCUUUC- -5'
25866 5' -60.3 NC_005337.1 + 66118 0.72 0.347739
Target:  5'- gGCCACgaagaUCCGCCGCCCGCuaGggGc -3'
miRNA:   3'- gUGGUGa----GGGUGGCGGGCGggCuuUc -5'
25866 5' -60.3 NC_005337.1 + 36138 0.72 0.355375
Target:  5'- cCGCCACggaCCCGCCGCCgcggUGCCUGGu-- -3'
miRNA:   3'- -GUGGUGa--GGGUGGCGG----GCGGGCUuuc -5'
25866 5' -60.3 NC_005337.1 + 37879 0.72 0.371
Target:  5'- gCGCCAcCUCguccuCCGCCGCCUGCUCGGGc- -3'
miRNA:   3'- -GUGGU-GAG-----GGUGGCGGGCGGGCUUuc -5'
25866 5' -60.3 NC_005337.1 + 63161 0.72 0.371
Target:  5'- cCGCCcgaggacguGCUgagCCCGCCGCCCGCuCCGGu-- -3'
miRNA:   3'- -GUGG---------UGA---GGGUGGCGGGCG-GGCUuuc -5'
25866 5' -60.3 NC_005337.1 + 115829 0.72 0.378985
Target:  5'- cCGCCAgUCCC-CCGCCCGUgCucAAGg -3'
miRNA:   3'- -GUGGUgAGGGuGGCGGGCGgGcuUUC- -5'
25866 5' -60.3 NC_005337.1 + 36283 0.72 0.378985
Target:  5'- gCACUGCgcgUCCugCGUUCGCCCGAAGa -3'
miRNA:   3'- -GUGGUGa--GGGugGCGGGCGGGCUUUc -5'
25866 5' -60.3 NC_005337.1 + 111616 0.71 0.386271
Target:  5'- aAgCGCUCCCGCagccgcgCGUCCGCgCCGAAGGc -3'
miRNA:   3'- gUgGUGAGGGUG-------GCGGGCG-GGCUUUC- -5'
25866 5' -60.3 NC_005337.1 + 133420 0.71 0.402788
Target:  5'- gGCCGCgcccgcgcugCCCGCCGCCUucgucgaGCCCGGGc- -3'
miRNA:   3'- gUGGUGa---------GGGUGGCGGG-------CGGGCUUuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.