miRNA display CGI


Results 1 - 20 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25869 3' -52.1 NC_005337.1 + 125247 0.66 0.982979
Target:  5'- gCGCCUCAgCU--ACGGACGCucaucGUGCGu -3'
miRNA:   3'- -GUGGAGUaGAagUGCCUGCG-----CAUGUg -5'
25869 3' -52.1 NC_005337.1 + 34233 0.66 0.982979
Target:  5'- cCAUCUCGUCgacgaUCuCGGaaauGCGCGcGCACa -3'
miRNA:   3'- -GUGGAGUAGa----AGuGCC----UGCGCaUGUG- -5'
25869 3' -52.1 NC_005337.1 + 87816 0.66 0.982979
Target:  5'- cCACCaggaGUCgcaCGCGucCGCGUACGCg -3'
miRNA:   3'- -GUGGag--UAGaa-GUGCcuGCGCAUGUG- -5'
25869 3' -52.1 NC_005337.1 + 127668 0.66 0.982979
Target:  5'- gCGCCUCAUCcagAUGGGCGCcgaccugGCGCc -3'
miRNA:   3'- -GUGGAGUAGaagUGCCUGCGca-----UGUG- -5'
25869 3' -52.1 NC_005337.1 + 123785 0.66 0.980894
Target:  5'- -cCCUCggugGUCUggACGGGCGUGUucuGCGCc -3'
miRNA:   3'- guGGAG----UAGAagUGCCUGCGCA---UGUG- -5'
25869 3' -52.1 NC_005337.1 + 23136 0.66 0.980894
Target:  5'- cCGCUUCAagcacauccugcUCUUCACGccCGUGUACAa -3'
miRNA:   3'- -GUGGAGU------------AGAAGUGCcuGCGCAUGUg -5'
25869 3' -52.1 NC_005337.1 + 111071 0.66 0.980894
Target:  5'- aCugCUUGUC--CGCGGGCGUgagGUGCGCc -3'
miRNA:   3'- -GugGAGUAGaaGUGCCUGCG---CAUGUG- -5'
25869 3' -52.1 NC_005337.1 + 41934 0.66 0.980894
Target:  5'- -uCCUCGUCgUCGgacggcUGGACG-GUGCGCg -3'
miRNA:   3'- guGGAGUAGaAGU------GCCUGCgCAUGUG- -5'
25869 3' -52.1 NC_005337.1 + 39197 0.66 0.980894
Target:  5'- uCGCCgCGggCUaCGCGGACccggacccggGCGUGCGCg -3'
miRNA:   3'- -GUGGaGUa-GAaGUGCCUG----------CGCAUGUG- -5'
25869 3' -52.1 NC_005337.1 + 25450 0.66 0.980894
Target:  5'- gCGCUUCGg---CACcguGGACGCGUGCGu -3'
miRNA:   3'- -GUGGAGUagaaGUG---CCUGCGCAUGUg -5'
25869 3' -52.1 NC_005337.1 + 23202 0.66 0.980894
Target:  5'- gCACCUCA-CgccCGCGGACaaGCaGUACAUc -3'
miRNA:   3'- -GUGGAGUaGaa-GUGCCUG--CG-CAUGUG- -5'
25869 3' -52.1 NC_005337.1 + 77770 0.66 0.978625
Target:  5'- gCGCCUCGgggucCGCGGaguuggggaGCGCGUACGg -3'
miRNA:   3'- -GUGGAGUagaa-GUGCC---------UGCGCAUGUg -5'
25869 3' -52.1 NC_005337.1 + 101341 0.66 0.978625
Target:  5'- aACCUCA-CguaCACGGGCGCcaucgaGCACa -3'
miRNA:   3'- gUGGAGUaGaa-GUGCCUGCGca----UGUG- -5'
25869 3' -52.1 NC_005337.1 + 74754 0.66 0.978625
Target:  5'- aCGCCuUCAUCgacgaccuggUCAcCGGGCGCGacuucgACGCc -3'
miRNA:   3'- -GUGG-AGUAGa---------AGU-GCCUGCGCa-----UGUG- -5'
25869 3' -52.1 NC_005337.1 + 11641 0.66 0.978625
Target:  5'- aGCC-CAggaaCUUCuCGGGCGCGUccgagaagaACACg -3'
miRNA:   3'- gUGGaGUa---GAAGuGCCUGCGCA---------UGUG- -5'
25869 3' -52.1 NC_005337.1 + 22648 0.66 0.978625
Target:  5'- gGCCU--UCggCGCGGACGCGcgGCuGCg -3'
miRNA:   3'- gUGGAguAGaaGUGCCUGCGCa-UG-UG- -5'
25869 3' -52.1 NC_005337.1 + 48079 0.66 0.978625
Target:  5'- gCugUUCAgguacgUCgUCACGGACGCGccggaGCGCu -3'
miRNA:   3'- -GugGAGU------AGaAGUGCCUGCGCa----UGUG- -5'
25869 3' -52.1 NC_005337.1 + 16930 0.66 0.977907
Target:  5'- gGgCUCGUCgaggaagacCACGGcccuggagaacccgACGCGUGCGCg -3'
miRNA:   3'- gUgGAGUAGaa-------GUGCC--------------UGCGCAUGUG- -5'
25869 3' -52.1 NC_005337.1 + 110355 0.66 0.976162
Target:  5'- gCGCCUgCcgCgggcgCGCGGGCGCGcgGCAg -3'
miRNA:   3'- -GUGGA-GuaGaa---GUGCCUGCGCa-UGUg -5'
25869 3' -52.1 NC_005337.1 + 3371 0.66 0.976162
Target:  5'- aCAUgUCGUCgUUCGUGGgcgagaagcGCGCGUGCGCc -3'
miRNA:   3'- -GUGgAGUAG-AAGUGCC---------UGCGCAUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.